Detailed information NTG0486521

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: IHE41_RS15830
• Genome accession: NZ_CP062153
• Coordinates: 3378509..3379498 (+)
• Length: 329 a.a.
• NCBI ID: WP_005478537.1
• Uniprot ID: A8D8R0
• Organism: Vibrio parahaemolyticus strain 17-VB00214
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3373509..3384498

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IHE41_RS15795 (IHE41_15770)	ftsB	3373517..3373798 (+)	282	WP_005455577.1	cell division protein FtsB	-
IHE41_RS15800 (IHE41_15775)	ispD	3373800..3374504 (+)	705	WP_005478544.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
IHE41_RS15805 (IHE41_15780)	ispF	3374522..3374998 (+)	477	WP_005380896.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
IHE41_RS15810 (IHE41_15785)	truD	3375045..3376088 (+)	1044	WP_078558482.1	tRNA pseudouridine(13) synthase TruD	-
IHE41_RS15815 (IHE41_15790)	surE	3376088..3376864 (+)	777	WP_020841269.1	5'/3'-nucleotidase SurE	-
IHE41_RS15820 (IHE41_15795)	-	3376864..3377490 (+)	627	WP_005455562.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
IHE41_RS15825 (IHE41_15800)	-	3377505..3378428 (+)	924	WP_239908912.1	peptidoglycan DD-metalloendopeptidase family protein	-
IHE41_RS15830 (IHE41_15805)	rpoS	3378509..3379498 (+)	990	WP_005478537.1	RNA polymerase sigma factor RpoS	Regulator
IHE41_RS15835 (IHE41_15810)	mutS	3379577..3382138 (-)	2562	WP_140052071.1	DNA mismatch repair protein MutS	-
IHE41_RS15840 (IHE41_15815)	pncC	3382223..3382705 (+)	483	WP_029826209.1	nicotinamide-nucleotide amidase	-

Sequence

Protein

• Length: 329 a.a.
• Molecular weight: 37560.38 Da
• Isoelectric Point: 4.6096

>NTDB_id=486521 IHE41_RS15830 WP_005478537.1 3378509..3379498(+) (rpoS) [Vibrio parahaemolyticus strain 17-VB00214]
MSISNTVSKVEEFEYDNASETTIDNELEKSSSTTEGKTAVREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRAL
RGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRT
IRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNS
DPEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNM
ENLFNVEDD

Nucleotide

• Length: 990 bp

>NTDB_id=486521 IHE41_RS15830 WP_005478537.1 3378509..3379498(+) (rpoS) [Vibrio parahaemolyticus strain 17-VB00214]
ATGAGTATCAGCAACACAGTATCCAAAGTTGAAGAGTTTGAATACGACAATGCGTCAGAGACGACCATTGATAACGAACT
CGAAAAATCATCATCTACTACCGAAGGCAAAACAGCTGTCCGTGAAGAGTTTGACGCGAGCAGTAAAAGCCTAGACGCAA
CTCAATTGTATCTAGGTGAAATTGGCTTCTCACCTCTACTTACTGCTGAAGAAGAAGTCCTTTACGCCCGCAGAGCATTG
CGTGGTGATGAAGCGGCTCGTAAGCGCATGATCGAAAGTAACTTGCGTTTAGTAGTAAAAATTTCTCGTCGGTACAGCAA
CCGTGGCCTAGCGCTACTCGATCTTATTGAAGAAGGTAACCTCGGTTTGATCCGAGCGGTTGAAAAATTCGATCCAGAAA
GAGGCTTCCGTTTCTCAACTTACGCAACATGGTGGATCCGTCAAACGATCGAACGTGCGTTGATGAACCAAACTCGCACC
ATTCGCTTGCCTATTCATGTCGTGAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAAAAGCTCGATCA
TGAACCAACTGCAGAAGAAATTGCTGCTCAATTAGATATACCAGTCGAAGATGTCAGCAAAATGTTGCGTCTTAACGAGC
GTATTAGCTCCGTTGATACCCCAATTGGTGGTGACGGTGAAAAAGCGCTTCTGGATATTATTCCTGACGCAAACAACTCT
GATCCAGAAGTGTCGACTCAAGATGATGACATCAAATCGTCTTTGATCCATTGGTTGGAAGAGTTGAATCCAAAACAAAA
AGAAGTGCTTGCACGCCGTTTTGGTTTGCTTGGCTATGAGCCGTCTACTCTTGAAGAAGTGGGACGAGAGATTGGTCTTA
CCCGTGAGCGTGTACGTCAAATTCAAGTGGAGGGTTTACGTCGACTTCGTGAAATCCTAATTAAACAAGGCCTAAATATG
GAAAACTTGTTTAACGTCGAAGACGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (52-85)

• Sigma-70 region 2 (Sigma70_r2) (90-159)

• Sigma-70, region 4 (Sigma70_r4) (258-311)

• Sigma-70 region 3 (Sigma70_r3) (170-243)

3D structure

• AlphaFold DB: A8D8R0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.832	100	0.851