Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexB   Type   Machinery gene
Locus tag   TL13_RS05300 Genome accession   NC_021213
Coordinates   1066464..1069730 (-) Length   1088 a.a.
NCBI ID   WP_015646904.1    Uniprot ID   -
Organism   Streptococcus suis TL13     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1061464..1074730
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TL13_RS05290 (TL13_1046) plsY 1062156..1062800 (+) 645 WP_015646902.1 glycerol-3-phosphate 1-O-acyltransferase PlsY -
  TL13_RS05295 (TL13_1047) rexA 1062811..1066464 (-) 3654 WP_015646903.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  TL13_RS05300 (TL13_1048) rexB 1066464..1069730 (-) 3267 WP_015646904.1 ATP-dependent nuclease subunit B Machinery gene
  TL13_RS05305 (TL13_1049) - 1069839..1069997 (-) 159 WP_015646905.1 hypothetical protein -
  TL13_RS05310 (TL13_1050) obgE 1070372..1071685 (-) 1314 WP_015646906.1 GTPase ObgE -
  TL13_RS05315 (TL13_1051) - 1071891..1072019 (-) 129 WP_002943675.1 DUF4044 domain-containing protein -
  TL13_RS05320 - 1072191..1072574 (-) 384 WP_032514712.1 hypothetical protein -
  TL13_RS05325 uvrC 1072735..1074504 (-) 1770 WP_024409440.1 excinuclease ABC subunit UvrC Machinery gene

Sequence

Protein


Download         Length: 1088 a.a.        Molecular weight: 124550.73 Da        Isoelectric Point: 5.2020

>NTDB_id=48652 TL13_RS05300 WP_015646904.1 1066464..1069730(-) (rexB) [Streptococcus suis TL13]
MKLVYTDIRNPLTQHLTDTSAEFAKEGKRVFYIAPNSLSFEMERKVLEYLPEQATFDIIVTRFGQLARYLMIDRKEAGQP
LDDVGLAMIFFRVLSRFEDGDLKVYGRLQTDFGFINQLVALYKELQRANMSILDLEAMDSPDKQADLVKIFLAVTDILSK
EGFEHQSKLAQLTSLVETGQLDEQLKNIVLVVDGFSRFSAEEESLVSALNERVSEILIGVYASKKAVQATYAEGNVYQAN
VDFLRQLSAQFQTKATYIGQEPVLDSIGKFSKNMEAYYDYSGTMIDLTPTDQEKIQLWDVVNQKEEVEQVATAIRQHVHQ
GARYKDILLLLGDVDSYKLQIGKIFDKYDIPYYFGKAEEMSHHPLVHFVESLERLRRYRFRAEDLLNLLKSGLYASISQK
ELDLFESYILFADMKGQAAFSRAFSVNGRADYDAEVIKQKRLVYDLNVLEPLRAKIMEPLNQLFKAGPQSGTALLEKFMA
FLEAIDLPKNMEKMSRNLSEVEQEKEEQVWKSFTHILENFHQIFGKEKLKMDDFLAILQAGMQASHYRTVPATVDVVNVK
SYDLIEPHTAKYVYAIGMGQSNFPKVAKNTSLLIEEEMEKVNLVSASSSRFDLVSRENIKKNHAAMMSLLNAATDQLVIS
TPQIYNEGEDSLSPYIKILQKMGLKSEERGRIKTLSPQDIGHYKSLLSRLIESERPSLDNEEWEGQRAFWTVLVRHLKKK
LESQGIEIPTITGEITSKQLSDETLAALYPEDKPLNLSASSLTNFYNNQYLYFVRNVLRLREQESIHPTAFQHGLFLHRI
FERVVMDQSELDFDQKVDKAILRTRDEAEFAMFYNQDADARYTEEVLDKIARSSATILRDNDLVEIDGQEKSFRQDKALV
FDLQNGKSVHVNGTIDRLDTLQINQAVGVVDYKSSDQSFSVGDFYNGLKPQLVTYLAALQELDETKDKPVFGAMYLHLQD
PIIKLKDTKNLEQLEGAANTSLAYKGLFLKEESLGLNHFYQTRNQLYTEDEFAVLLNHNQELYKQAAKDILDGRFAINPY
TKDGRSVAGEQLKAITGFEADRHMGMARRLVKEVKRQDWMERMKGGQD

Nucleotide


Download         Length: 3267 bp        

>NTDB_id=48652 TL13_RS05300 WP_015646904.1 1066464..1069730(-) (rexB) [Streptococcus suis TL13]
ATGAAATTAGTCTATACAGATATTCGCAATCCTCTGACACAGCATTTAACGGATACCTCGGCAGAATTTGCTAAGGAAGG
TAAGCGAGTTTTTTATATTGCTCCAAACTCTCTATCCTTTGAGATGGAACGCAAGGTCTTGGAATACCTGCCTGAACAGG
CAACTTTTGACATTATCGTGACCCGTTTTGGGCAATTGGCCCGCTATTTGATGATTGATAGGAAAGAAGCAGGTCAACCG
CTGGATGATGTTGGTCTGGCCATGATTTTCTTTCGTGTTCTATCGCGATTTGAAGATGGCGACTTGAAAGTCTATGGTCG
TTTGCAGACAGATTTTGGTTTCATTAACCAGCTAGTTGCTTTATACAAAGAATTGCAACGGGCAAATATGTCTATTTTGG
ACTTGGAAGCCATGGACTCACCAGATAAGCAGGCTGATTTGGTAAAGATTTTTCTGGCTGTAACAGACATTTTGTCCAAA
GAAGGCTTTGAGCATCAGTCTAAGTTGGCACAGCTGACTAGCTTGGTAGAAACTGGTCAGTTGGATGAGCAGTTGAAGAA
CATTGTGCTGGTGGTAGACGGATTTTCTCGTTTTTCGGCAGAAGAAGAATCTTTAGTAAGTGCTTTAAATGAACGAGTGT
CGGAAATCCTGATTGGTGTATATGCCAGCAAGAAAGCTGTGCAAGCCACCTATGCGGAAGGCAACGTATATCAAGCCAAC
GTTGACTTTTTACGTCAGTTATCAGCGCAGTTCCAGACTAAGGCAACTTATATTGGTCAAGAGCCAGTCTTGGACAGTAT
CGGTAAATTTTCAAAGAATATGGAAGCCTATTATGACTACAGCGGAACCATGATAGACTTGACTCCAACAGATCAAGAAA
AAATCCAGCTATGGGACGTCGTTAACCAAAAAGAAGAGGTGGAGCAGGTTGCGACTGCAATTCGTCAGCATGTGCATCAA
GGGGCTCGCTATAAAGACATCTTGTTGCTCTTGGGTGATGTGGATAGCTACAAGTTGCAGATTGGCAAGATTTTTGACAA
ATATGACATTCCTTACTATTTTGGTAAGGCAGAGGAGATGAGTCATCATCCTCTGGTCCATTTTGTGGAGTCCTTGGAGC
GCTTGCGTCGCTATCGTTTTCGTGCGGAAGACCTGCTCAATCTCCTCAAATCTGGTTTGTACGCCAGCATTTCCCAAAAG
GAGCTGGACCTATTTGAGTCTTACATCCTTTTTGCGGATATGAAGGGGCAGGCTGCTTTTTCGAGGGCTTTTTCGGTCAA
TGGCAGAGCGGACTATGATGCTGAAGTCATCAAGCAGAAAAGGCTTGTATATGATTTGAATGTCTTGGAACCTCTACGTG
CTAAGATTATGGAACCTTTGAACCAGCTGTTTAAGGCTGGACCACAATCTGGTACTGCCTTGCTTGAGAAATTTATGGCA
TTTTTGGAGGCAATTGATCTTCCTAAAAATATGGAAAAAATGTCTCGAAATTTGAGCGAAGTAGAGCAAGAAAAAGAAGA
GCAGGTCTGGAAAAGTTTTACCCATATTCTAGAGAATTTTCATCAGATTTTTGGAAAAGAAAAGTTGAAAATGGATGATT
TTCTGGCTATTTTACAGGCTGGGATGCAGGCCAGCCACTATCGTACCGTTCCTGCAACGGTTGATGTGGTCAATGTCAAA
TCCTATGATTTGATCGAGCCGCACACTGCAAAGTATGTTTATGCTATCGGAATGGGCCAGTCCAATTTTCCAAAAGTTGC
CAAGAATACCAGTCTATTGATAGAAGAAGAGATGGAAAAAGTCAATCTTGTCTCGGCTAGTTCCTCACGTTTCGATTTGG
TCAGCCGAGAGAATATTAAGAAGAACCATGCTGCTATGATGTCTCTGCTTAATGCTGCGACGGATCAGTTAGTCATTTCA
ACTCCTCAGATTTATAACGAAGGTGAGGATAGTCTCTCCCCTTATATCAAGATTCTCCAAAAAATGGGGCTGAAATCCGA
AGAACGTGGACGGATTAAAACACTTAGTCCGCAAGACATCGGTCACTACAAGAGTCTCTTATCCCGTTTGATTGAGTCAG
AAAGACCATCTCTTGATAATGAAGAATGGGAAGGGCAGAGGGCCTTCTGGACAGTCTTGGTTCGCCATTTGAAGAAGAAA
TTGGAGTCGCAAGGCATTGAAATTCCGACCATTACTGGCGAAATTACTTCTAAACAACTTTCAGATGAAACCTTGGCTGC
TTTATATCCAGAGGATAAGCCCCTCAATCTTTCTGCATCCAGCTTGACCAATTTCTACAATAACCAATATCTTTACTTTG
TCCGCAATGTGCTTCGCTTGCGGGAACAGGAATCCATCCATCCGACGGCCTTTCAACACGGGCTCTTCTTGCATCGGATT
TTTGAACGAGTGGTCATGGACCAATCTGAGCTAGATTTTGATCAAAAAGTGGACAAGGCCATCCTGCGTACGCGTGACGA
GGCAGAATTTGCTATGTTTTATAACCAAGATGCGGATGCTCGTTATACGGAGGAGGTGCTGGATAAGATTGCTCGTTCCA
GTGCGACTATTTTGCGGGATAATGATTTGGTTGAAATTGATGGCCAGGAAAAGAGTTTCCGTCAGGATAAGGCGCTAGTT
TTTGACCTTCAAAATGGCAAGAGTGTGCATGTAAATGGTACCATTGACCGCTTGGATACCTTACAAATCAATCAGGCTGT
CGGTGTTGTGGATTACAAGTCCAGTGACCAATCTTTTTCAGTTGGGGATTTTTACAATGGTCTAAAACCTCAGTTGGTGA
CCTACTTGGCAGCCTTACAAGAGCTGGATGAAACCAAGGATAAACCTGTTTTTGGAGCTATGTATTTGCATTTGCAGGAT
CCGATTATCAAATTAAAAGACACGAAGAATTTAGAACAGCTAGAAGGAGCTGCCAATACTAGTTTGGCTTACAAGGGGCT
TTTCTTGAAGGAGGAAAGTCTAGGGCTCAATCATTTTTATCAGACTCGTAACCAACTCTATACGGAAGATGAGTTTGCGG
TTTTATTGAACCACAACCAAGAACTCTACAAACAAGCTGCCAAGGACATCCTGGATGGTCGCTTTGCTATTAACCCTTAT
ACCAAAGATGGGCGTTCGGTGGCAGGTGAGCAGCTGAAGGCGATCACTGGTTTTGAGGCGGATCGGCACATGGGCATGGC
ACGGCGGTTGGTAAAAGAGGTCAAGCGTCAAGATTGGATGGAACGAATGAAAGGAGGTCAGGACTAA

Domains

Predicted by InterProScan.

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(757-1042)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexB Streptococcus pneumoniae R6

44.878

100

0.455

Multiple sequence alignment