Detailed information NTG0486502

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: IHE41_RS11620
• Genome accession: NZ_CP062153
• Coordinates: 2503675..2504721 (+)
• Length: 348 a.a.
• NCBI ID: WP_254894148.1
• Uniprot ID: -
• Organism: Vibrio parahaemolyticus strain 17-VB00214
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 2498675..2509721

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IHE41_RS11600 (IHE41_11565)	rplC	2499248..2499877 (-)	630	WP_005456132.1	50S ribosomal protein L3	-
IHE41_RS11605 (IHE41_11570)	rpsJ	2499892..2500203 (-)	312	WP_004410492.1	30S ribosomal protein S10	-
IHE41_RS11610 (IHE41_11575)	rpmE	2500661..2500882 (-)	222	WP_005457203.1	50S ribosomal protein L31	-
IHE41_RS11615 (IHE41_11580)	priA	2501177..2503381 (+)	2205	WP_264400785.1	primosomal protein N'	-
IHE41_RS11620 (IHE41_11585)	cytR	2503675..2504721 (+)	1047	WP_254894148.1	DNA-binding transcriptional regulator CytR	Regulator
IHE41_RS11625 (IHE41_11590)	ftsN	2504897..2505442 (+)	546	WP_024703418.1	cell division protein FtsN	-
IHE41_RS11630 (IHE41_11595)	hslV	2505606..2506157 (+)	552	WP_005489705.1	ATP-dependent protease subunit HslV	-
IHE41_RS11635 (IHE41_11600)	hslU	2506181..2507512 (+)	1332	WP_005489452.1	HslU--HslV peptidase ATPase subunit	-
IHE41_RS11640 (IHE41_11605)	-	2507697..2508614 (+)	918	WP_005457195.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
IHE41_RS11645 (IHE41_11610)	rraA	2508691..2509203 (+)	513	WP_005457192.1	ribonuclease E activity regulator RraA	-
IHE41_RS11650 (IHE41_11615)	zapB	2509308..2509550 (-)	243	WP_005481417.1	cell division protein ZapB	-

Sequence

Protein

• Length: 348 a.a.
• Molecular weight: 38445.17 Da
• Isoelectric Point: 6.7430

>NTDB_id=486502 IHE41_RS11620 WP_254894148.1 2503675..2504721(+) (cytR) [Vibrio parahaemolyticus strain 17-VB00214]
MTSSWQKFERLNTMATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEDAVLEAGYSPNSLARNLRRNESKTIVTIVP
DICDPYFSEIIRGIEDAAMEHGYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEF
APELELPTVHIDNLTSAFEAVNYLTQLGHKRIAQISGPDTAVLCQFRQQGYQQALRRAGISKDPQYSVITEFSFDGGAKA
VRKLLELPEPPTAIFCHCDTMAIGAIQEAKRLGLRVPQDLSVVGFDDINFAQYCDPPLTTISQPRYEIGRQAMLMMLELL
KGHDVHSGSRLLETKLVVRGSAAPPQRA

Nucleotide

• Length: 1047 bp

>NTDB_id=486502 IHE41_RS11620 WP_254894148.1 2503675..2504721(+) (cytR) [Vibrio parahaemolyticus strain 17-VB00214]
ATAACGTCATCTTGGCAAAAATTTGAGAGGTTAAACACTATGGCGACAATGAAGGATGTTGCCCAGCTTGCGGGAGTGTC
GACAGCTACGGTATCTCGAGCATTAATGAATCCAGAAAAAGTCTCTTCTTCAACAAGAAAAAGAGTCGAAGATGCCGTCC
TTGAAGCGGGCTATTCTCCAAATTCATTAGCGCGTAATCTACGTAGAAACGAATCAAAAACGATTGTTACCATCGTTCCT
GACATCTGTGATCCTTACTTTTCTGAAATCATTCGTGGTATCGAAGACGCCGCTATGGAACATGGCTACCTCGTACTGCT
CGGTGACAGCGGCCAGCAGAAAAAGCGTGAAAGCTCGTTTGTGAATCTAGTGTTCACCAAACAAGCCGATGGCATGTTAC
TGCTTGGTACCGACCTGCCATTTGATGTCAGCAAGCCAGAACAGAAAAACCTGCCACCAATGGTCATGGCTTGTGAGTTT
GCGCCAGAGCTAGAATTACCAACCGTGCACATTGACAACCTAACGTCTGCTTTTGAAGCGGTCAATTACCTAACTCAACT
TGGCCATAAACGCATAGCACAAATTTCAGGGCCAGACACAGCGGTATTGTGCCAGTTCCGCCAGCAAGGTTATCAACAAG
CCTTGCGTCGCGCGGGGATCAGTAAAGACCCACAATACAGCGTTATCACTGAGTTTTCTTTTGACGGCGGCGCGAAAGCT
GTACGTAAGTTGCTAGAACTTCCAGAGCCACCAACTGCGATTTTCTGCCACTGTGACACCATGGCAATCGGCGCAATCCA
AGAAGCGAAACGACTCGGTCTGCGCGTTCCGCAAGATCTGTCAGTGGTTGGTTTCGATGATATCAACTTTGCTCAATACT
GCGATCCACCGTTAACAACCATTTCTCAACCTCGTTATGAAATTGGCCGCCAAGCGATGCTTATGATGCTTGAACTCCTT
AAAGGCCATGACGTTCATTCAGGTTCACGCTTACTAGAAACTAAGCTTGTTGTCCGTGGTAGCGCAGCGCCACCGCAACG
CGCCTAA

Domains

Predicted by InterproScan.

• Periplasmic binding protein-like domain (Peripla_BP_3) (181-341)

• Bacterial regulatory proteins, lacI family (LacI) (16-61)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	100	100	1
cytR	Vibrio cholerae C6706	90.719	95.977	0.871