Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   TL13_RS05120 Genome accession   NC_021213
Coordinates   1029426..1031162 (-) Length   578 a.a.
NCBI ID   WP_015646884.1    Uniprot ID   -
Organism   Streptococcus suis TL13     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1024426..1036162
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TL13_RS05105 (TL13_1012) - 1025277..1026563 (-) 1287 WP_014637977.1 homoserine dehydrogenase -
  TL13_RS05110 (TL13_1013) - 1026668..1027591 (+) 924 WP_041179389.1 polysaccharide deacetylase family protein -
  TL13_RS05115 (TL13_1014) rcrQ 1027648..1029417 (-) 1770 WP_015646883.1 ABC transporter ATP-binding protein Regulator
  TL13_RS05120 (TL13_1015) rcrP 1029426..1031162 (-) 1737 WP_015646884.1 ABC transporter ATP-binding protein Regulator
  TL13_RS05125 (TL13_1016) - 1031238..1031480 (-) 243 WP_012028079.1 KH domain-containing protein -
  TL13_RS05130 (TL13_1017) rpsP 1031502..1031774 (-) 273 WP_002940682.1 30S ribosomal protein S16 -
  TL13_RS05135 (TL13_1018) - 1031899..1032207 (-) 309 WP_015646885.1 DUF4298 domain-containing protein -
  TL13_RS05140 (TL13_1019) pcp 1032207..1032854 (-) 648 WP_002940685.1 pyroglutamyl-peptidase I -
  TL13_RS05145 (TL13_1020) - 1032851..1033606 (-) 756 WP_015646886.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 578 a.a.        Molecular weight: 65122.44 Da        Isoelectric Point: 5.1991

>NTDB_id=48650 TL13_RS05120 WP_015646884.1 1029426..1031162(-) (rcrP) [Streptococcus suis TL13]
MNLIWTYLKKYPKWIALDLLGALLFVVVNLGLPTFLARMIDQGITKNDVSQLYFWAGMMGLIVLLGIVGRVTLAYAAGKL
TTNIVKDIRNDLYEKIQDYSHHEYEQIGVSSLVARMTNDAFVLMQFSEMVLKLGIITPLMMIASVIMTLVTSPSLAWTVA
VAMPFLVFVIFYVATKTRPLSEKQQKRLDTINQYVRENLMGLRVIRAFTREEFQEERFESVNEEYTDISKKLFNLTGLTE
PLFVQIIIAMIVAIVWFALDPLKTGSLQIGDLVAFIEYSFHALFSFLLFANLFNMYPRMSVSSQRIQEVLDMPISISKNE
EGITETDTRGYLEFENVTFAYPGETESPVLHNISFKAKPGETIAFIGSTGSGKSSLVNLIPRFYDVTLGRILVDGVDVRR
YNLKALRSKIGFIPQKALLFTGTIAENLKYGKMDASLAELHDATDVAQAKEFIESKEEKFDTHLAEGGSNLSGGQKQRLS
IARAIVKQPDIYIFDDSFSALDYKTDAILRSRLKEVTENATVLIVAQRVGTIMDADQIIVLNEGEIVGRGTHNELMESNE
IYREIANSQLNRQSLTEE

Nucleotide


Download         Length: 1737 bp        

>NTDB_id=48650 TL13_RS05120 WP_015646884.1 1029426..1031162(-) (rcrP) [Streptococcus suis TL13]
ATGAATCTGATTTGGACCTATTTGAAAAAATATCCTAAGTGGATTGCCTTAGACTTGTTGGGGGCCTTATTGTTTGTAGT
GGTAAACTTGGGCTTGCCAACTTTTTTGGCTAGGATGATTGACCAAGGAATTACAAAGAACGATGTTAGTCAGCTCTATT
TCTGGGCGGGGATGATGGGATTGATTGTCCTGCTCGGGATTGTTGGTCGAGTGACACTTGCCTATGCAGCTGGAAAGTTG
ACTACCAACATCGTCAAAGATATTCGAAATGATCTGTATGAGAAAATTCAGGACTATTCTCATCATGAATATGAGCAGAT
TGGTGTTTCTTCTCTAGTTGCTCGTATGACAAATGATGCTTTTGTTCTTATGCAATTCTCTGAAATGGTCTTGAAACTAG
GTATTATTACACCCTTGATGATGATTGCTTCTGTCATCATGACCTTGGTAACCAGTCCGAGCTTAGCCTGGACAGTAGCA
GTAGCCATGCCGTTTCTAGTTTTTGTTATTTTCTATGTGGCAACAAAAACTCGTCCTCTTTCTGAAAAGCAACAAAAACG
TTTGGACACGATCAACCAATATGTTCGTGAAAATCTCATGGGCTTGCGTGTCATTCGTGCCTTTACTCGTGAGGAGTTTC
AAGAGGAGCGCTTTGAGTCGGTCAATGAGGAATATACCGATATTTCCAAAAAGCTCTTTAATCTGACTGGATTGACAGAG
CCTCTCTTTGTCCAGATTATCATTGCTATGATTGTAGCCATTGTCTGGTTTGCTTTGGATCCCTTGAAAACAGGTAGTCT
GCAAATCGGTGATTTGGTAGCTTTTATCGAATATAGTTTCCACGCGCTTTTCTCATTCTTGCTCTTTGCTAACTTGTTTA
ACATGTATCCACGTATGTCGGTATCGAGCCAACGGATTCAGGAAGTCTTGGACATGCCTATTTCCATTTCTAAGAATGAA
GAAGGTATTACTGAAACAGATACTCGTGGTTATTTGGAATTTGAAAATGTAACTTTTGCCTATCCTGGTGAAACGGAATC
GCCTGTGCTGCACAATATTTCCTTCAAAGCTAAGCCTGGTGAAACCATTGCCTTTATTGGTTCAACAGGTTCTGGTAAGT
CTTCCTTGGTCAACTTGATTCCACGTTTCTATGATGTGACACTTGGTCGTATCTTGGTGGACGGTGTGGATGTCAGACGC
TACAATCTAAAGGCACTCCGCAGCAAGATTGGCTTTATTCCGCAGAAAGCTCTGCTATTTACCGGAACTATCGCGGAAAA
CTTAAAGTACGGTAAGATGGATGCTAGTCTTGCAGAACTTCATGATGCGACGGATGTGGCTCAGGCTAAGGAGTTTATCG
AGAGTAAGGAAGAAAAATTCGACACCCATCTAGCAGAAGGTGGAAGCAACCTGTCAGGCGGGCAAAAGCAACGTTTGTCT
ATTGCACGTGCTATTGTGAAGCAGCCGGATATTTACATTTTTGATGATTCTTTCTCAGCCTTGGATTATAAGACGGATGC
AATTTTGCGGAGTCGTTTGAAGGAAGTGACGGAAAATGCGACGGTGCTAATTGTGGCTCAACGTGTCGGAACCATTATGG
ATGCTGACCAGATTATCGTGCTGAACGAAGGTGAAATCGTTGGCCGCGGCACCCACAATGAATTGATGGAAAGCAATGAG
ATTTATCGAGAAATCGCCAATTCTCAGCTTAACCGTCAATCGTTAACAGAAGAATAG

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(20-280)

ABC transporter (ABC_tran)

(350-497)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

38.776

100

0.394

Multiple sequence alignment