Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   TL13_RS05115 Genome accession   NC_021213
Coordinates   1027648..1029417 (-) Length   589 a.a.
NCBI ID   WP_015646883.1    Uniprot ID   -
Organism   Streptococcus suis TL13     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1022648..1034417
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TL13_RS05095 (TL13_1010) murB 1023271..1024179 (-) 909 WP_015646881.1 UDP-N-acetylmuramate dehydrogenase -
  TL13_RS05100 (TL13_1011) thrB 1024413..1025273 (-) 861 WP_011922331.1 homoserine kinase -
  TL13_RS05105 (TL13_1012) - 1025277..1026563 (-) 1287 WP_014637977.1 homoserine dehydrogenase -
  TL13_RS05110 (TL13_1013) - 1026668..1027591 (+) 924 WP_041179389.1 polysaccharide deacetylase family protein -
  TL13_RS05115 (TL13_1014) rcrQ 1027648..1029417 (-) 1770 WP_015646883.1 ABC transporter ATP-binding protein Regulator
  TL13_RS05120 (TL13_1015) rcrP 1029426..1031162 (-) 1737 WP_015646884.1 ABC transporter ATP-binding protein Regulator
  TL13_RS05125 (TL13_1016) - 1031238..1031480 (-) 243 WP_012028079.1 KH domain-containing protein -
  TL13_RS05130 (TL13_1017) rpsP 1031502..1031774 (-) 273 WP_002940682.1 30S ribosomal protein S16 -
  TL13_RS05135 (TL13_1018) - 1031899..1032207 (-) 309 WP_015646885.1 DUF4298 domain-containing protein -
  TL13_RS05140 (TL13_1019) pcp 1032207..1032854 (-) 648 WP_002940685.1 pyroglutamyl-peptidase I -
  TL13_RS05145 (TL13_1020) - 1032851..1033606 (-) 756 WP_015646886.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 589 a.a.        Molecular weight: 65789.75 Da        Isoelectric Point: 5.4023

>NTDB_id=48649 TL13_RS05115 WP_015646883.1 1027648..1029417(-) (rcrQ) [Streptococcus suis TL13]
MKNRSVFTRVWDYLRRYKSSVFLAVFLKTISAVMNALEPFVLGLIITELTKNLLDIANGVEGAQINYSYIAIMLAIYALR
ALLYEIGAYGSNYFMTKAVQGATKELRQDLSHKINKIPVSYFDKHQYGDLLGRFTSDVETVSNALQQSFLQLVNAVLTLS
LAIFMCFWLDVSLALVVVTLVPVTYFGSKFVMGKSQPYFKQQADALGRLNGFVQENLTGFNVLKLYGREEISTEEFRQIT
ADLQEVGFKASFMSGLLMPLVHGFSNIAYVVVALLSGLKVLAGTLTVGNMQAFVQYVWQISQPVQTLTQLAPQLQSAKSS
LERIFSVLDELDEEDANALELTASLTGQVSFEQVEFGYSEDKPLIRNFNLDVQPGEMVAIVGPTGAGKTTLINLLMRFYD
VTSGAIKVDGQDIRNLSRQSYRSQFGMVLQDAWLYEGTIKENLRFGRLDATDEEIVEAAKAANVDHFIRTLPGGYNMEMN
QESSNISQGQKQLLTIARALLADPAILILDEATSSVDTRLELLIQKAMKRLMKGRTSFVIAHRLSTIQEADKILVLKDGQ
IIEQGNHESLLADKGFYYNLYQSQFSESK

Nucleotide


Download         Length: 1770 bp        

>NTDB_id=48649 TL13_RS05115 WP_015646883.1 1027648..1029417(-) (rcrQ) [Streptococcus suis TL13]
ATGAAGAATAGATCAGTATTTACCCGTGTTTGGGACTATTTACGTCGTTACAAATCTTCTGTATTTTTAGCCGTTTTTCT
AAAGACCATTAGCGCAGTTATGAATGCCTTAGAACCCTTTGTACTGGGGCTTATCATTACAGAATTGACCAAGAATCTGT
TGGATATTGCTAATGGAGTAGAAGGAGCGCAGATTAACTATTCCTACATTGCCATCATGCTTGCCATCTATGCCCTTCGT
GCCCTTCTATATGAAATCGGTGCCTACGGTTCTAACTATTTTATGACCAAGGCAGTGCAGGGAGCAACTAAGGAACTACG
TCAGGACTTGAGCCACAAAATTAACAAGATTCCAGTATCTTATTTTGACAAGCACCAGTATGGTGATTTACTCGGACGTT
TTACAAGCGATGTGGAGACTGTTTCAAACGCCCTACAACAAAGTTTTCTCCAGCTAGTCAATGCCGTTCTGACCCTCTCT
CTAGCCATTTTCATGTGTTTCTGGTTGGATGTATCATTAGCTCTCGTAGTCGTGACCTTGGTTCCAGTGACCTATTTTGG
TTCTAAGTTTGTCATGGGCAAGTCTCAACCATATTTCAAGCAGCAGGCTGATGCCCTGGGGCGTTTGAACGGCTTTGTCC
AAGAAAATCTGACTGGTTTTAACGTTCTCAAACTTTACGGCCGTGAAGAAATTTCTACAGAAGAGTTTCGCCAGATTACC
GCAGATTTGCAGGAAGTTGGTTTCAAGGCTAGTTTCATGTCTGGCTTGCTCATGCCCCTGGTACACGGCTTCTCAAACAT
CGCCTACGTTGTCGTCGCCCTGCTATCTGGATTGAAAGTTCTTGCAGGTACATTGACGGTGGGTAATATGCAGGCCTTCG
TCCAATACGTCTGGCAGATTTCTCAGCCAGTCCAAACCTTGACCCAATTGGCACCACAGTTACAGTCTGCCAAATCTTCC
CTTGAACGCATCTTTTCAGTCTTAGATGAACTTGACGAAGAAGACGCCAATGCGCTGGAGTTGACAGCTAGTCTGACAGG
ACAAGTCAGCTTTGAACAGGTTGAATTTGGCTATTCAGAAGACAAGCCGCTCATCCGTAACTTTAATCTGGATGTTCAAC
CCGGTGAGATGGTGGCTATCGTTGGACCAACGGGGGCAGGTAAGACTACTCTTATCAACTTGCTCATGCGTTTCTACGAT
GTCACATCAGGTGCTATCAAGGTAGATGGGCAGGATATTCGAAATCTTTCTCGTCAATCCTACCGTAGTCAATTTGGCAT
GGTCTTGCAGGATGCTTGGCTCTATGAAGGGACCATCAAGGAAAATCTGCGTTTTGGACGCCTGGATGCGACGGATGAGG
AAATTGTGGAGGCTGCTAAAGCTGCCAACGTTGACCACTTTATCCGTACCCTGCCTGGTGGTTATAATATGGAAATGAAC
CAGGAATCCAGCAATATTTCCCAAGGACAAAAACAGCTTTTGACCATTGCACGTGCCTTGTTGGCGGATCCTGCTATTCT
GATTCTTGACGAAGCGACTTCTTCAGTCGATACCCGTTTGGAACTATTGATTCAAAAAGCCATGAAACGGTTGATGAAAG
GGCGGACAAGTTTCGTCATCGCTCATCGCTTATCTACCATTCAGGAAGCTGATAAGATTTTGGTCTTGAAAGATGGACAG
ATTATCGAACAAGGTAACCATGAAAGTCTTTTGGCAGACAAAGGTTTCTATTATAATCTTTATCAAAGTCAGTTTAGTGA
ATCCAAATAA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(21-304)

ABC transporter (ABC_tran)

(366-514)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

43.39

100

0.435

Multiple sequence alignment