Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   IF561_RS18840 Genome accession   NZ_CP062151
Coordinates   595298..596395 (+) Length   365 a.a.
NCBI ID   WP_005463467.1    Uniprot ID   Q87GU4
Organism   Vibrio parahaemolyticus strain 19-VB00998     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 590298..601395
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IF561_RS18810 (IF561_18795) - 590434..591411 (+) 978 WP_005477354.1 Gfo/Idh/MocA family protein -
  IF561_RS18815 (IF561_18800) - 591485..592822 (-) 1338 WP_264401805.1 MATE family efflux transporter -
  IF561_RS18820 (IF561_18805) - 592945..593259 (-) 315 WP_005453573.1 DUF496 family protein -
  IF561_RS18825 (IF561_18810) - 593587..593802 (+) 216 WP_005477197.1 hypothetical protein -
  IF561_RS18830 (IF561_18815) - 593979..594629 (+) 651 WP_005499314.1 YceH family protein -
  IF561_RS18835 (IF561_18820) - 594626..594946 (+) 321 WP_005463466.1 GIY-YIG nuclease family protein -
  IF561_RS18840 (IF561_18825) luxP 595298..596395 (+) 1098 WP_005463467.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  IF561_RS18845 (IF561_18830) luxQ 596395..598971 (+) 2577 WP_133280330.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ -
  IF561_RS18850 (IF561_18835) - 599183..599638 (+) 456 WP_005477342.1 MarR family transcriptional regulator -
  IF561_RS18855 (IF561_18840) - 599677..600732 (+) 1056 WP_025525186.1 HlyD family secretion protein -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 41339.67 Da        Isoelectric Point: 5.0568

>NTDB_id=486478 IF561_RS18840 WP_005463467.1 595298..596395(+) (luxP) [Vibrio parahaemolyticus strain 19-VB00998]
MNKALVLSLISIAGMSPASQASQVLNGYWAYQEFLNEFPEQKHLTDALAAAVRDDPVPIAPEKRHPLKISVVYPGQQISD
YWIRNIDAFEKRLDKLNIDYQINQVFTRPNADIKQQSLSLMEALKSNSDYLIFTLDTTRHRKFVEHVLDSTKTKLILQNI
TTPVREWETRQPFMYVGFDHAEGSRELAVEFGKQFPKNTHYSVLYFSEGYISDIRGNTFIHQVNQDSQFELQSAYYTKAT
KQSGYEAAKASLKKYPDVEFIYACSTDVALGAVEALSELGREDVMINGWGGGSAELDAILKGELDITVMRMNDDTGIAMA
EAIKWDLEGKPVPTVYSGDFEVVTKSDSPERIEALRKRAFRYSDN

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=486478 IF561_RS18840 WP_005463467.1 595298..596395(+) (luxP) [Vibrio parahaemolyticus strain 19-VB00998]
ATGAATAAAGCGTTAGTATTGTCCCTGATTTCAATTGCCGGCATGTCTCCGGCTTCACAAGCCTCTCAGGTTCTTAACGG
CTACTGGGCGTATCAAGAATTCTTAAATGAATTTCCAGAACAGAAACACTTAACGGATGCTCTGGCTGCGGCCGTGAGAG
ACGATCCTGTGCCTATTGCCCCTGAAAAAAGACACCCATTAAAAATCTCCGTTGTTTATCCAGGGCAGCAGATTTCCGAT
TACTGGATAAGAAACATCGACGCGTTTGAGAAGCGCTTAGATAAACTCAATATTGATTACCAAATCAATCAAGTGTTTAC
GCGACCAAACGCCGATATCAAACAACAAAGCCTTTCTTTGATGGAAGCACTGAAAAGCAATTCCGACTACTTAATTTTTA
CACTCGATACGACCCGACATCGTAAGTTTGTCGAACATGTTTTAGATTCCACCAAAACCAAACTTATCCTGCAAAATATC
ACGACGCCAGTTCGTGAATGGGAAACTCGACAGCCTTTTATGTACGTCGGTTTCGATCACGCTGAAGGCAGTCGCGAACT
CGCTGTAGAGTTTGGCAAGCAGTTCCCAAAAAATACCCATTACAGTGTTTTGTACTTCTCTGAAGGCTACATTAGCGATA
TCCGTGGTAACACATTCATTCACCAAGTGAACCAAGACAGTCAGTTTGAACTACAATCTGCTTACTATACAAAAGCGACA
AAACAGTCCGGGTATGAAGCTGCAAAAGCCAGCTTGAAAAAATACCCAGATGTCGAGTTCATTTATGCTTGTTCAACCGA
CGTTGCGTTAGGTGCCGTCGAAGCACTTTCTGAACTTGGCCGTGAAGACGTTATGATTAATGGCTGGGGCGGTGGTTCTG
CTGAGCTAGACGCTATCTTAAAAGGGGAGTTAGATATCACCGTCATGCGTATGAATGATGATACTGGCATTGCTATGGCA
GAGGCGATCAAATGGGATTTGGAAGGTAAGCCTGTACCAACGGTGTACTCTGGGGACTTCGAAGTTGTGACCAAATCAGA
TTCCCCTGAGCGAATTGAAGCTCTCAGAAAACGTGCATTTAGATACTCAGACAATTGA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(69-324)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87GU4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

64.56

99.726

0.644