Detailed information NTG0486475

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: IF561_RS16180
• Genome accession: NZ_CP062150
• Coordinates: 3417574..3418563 (+)
• Length: 329 a.a.
• NCBI ID: WP_005478537.1
• Uniprot ID: A8D8R0
• Organism: Vibrio parahaemolyticus strain 19-VB00998
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3412574..3423563

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IF561_RS16145 (IF561_16140)	ftsB	3412582..3412863 (+)	282	WP_005455577.1	cell division protein FtsB	-
IF561_RS16150 (IF561_16145)	ispD	3412865..3413569 (+)	705	WP_005478544.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
IF561_RS16155 (IF561_16150)	ispF	3413587..3414063 (+)	477	WP_005380896.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
IF561_RS16160 (IF561_16155)	truD	3414110..3415153 (+)	1044	WP_078558482.1	tRNA pseudouridine(13) synthase TruD	-
IF561_RS16165 (IF561_16160)	surE	3415153..3415929 (+)	777	WP_020841269.1	5'/3'-nucleotidase SurE	-
IF561_RS16170 (IF561_16165)	-	3415929..3416555 (+)	627	WP_005455562.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
IF561_RS16175 (IF561_16170)	-	3416570..3417493 (+)	924	WP_239908912.1	peptidoglycan DD-metalloendopeptidase family protein	-
IF561_RS16180 (IF561_16175)	rpoS	3417574..3418563 (+)	990	WP_005478537.1	RNA polymerase sigma factor RpoS	Regulator
IF561_RS16185 (IF561_16180)	mutS	3418642..3421203 (-)	2562	WP_140052071.1	DNA mismatch repair protein MutS	-
IF561_RS16190 (IF561_16185)	pncC	3421288..3421770 (+)	483	WP_029826209.1	nicotinamide-nucleotide amidase	-

Sequence

Protein

• Length: 329 a.a.
• Molecular weight: 37560.38 Da
• Isoelectric Point: 4.6096

>NTDB_id=486475 IF561_RS16180 WP_005478537.1 3417574..3418563(+) (rpoS) [Vibrio parahaemolyticus strain 19-VB00998]
MSISNTVSKVEEFEYDNASETTIDNELEKSSSTTEGKTAVREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRAL
RGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRT
IRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNS
DPEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNM
ENLFNVEDD

Nucleotide

• Length: 990 bp

>NTDB_id=486475 IF561_RS16180 WP_005478537.1 3417574..3418563(+) (rpoS) [Vibrio parahaemolyticus strain 19-VB00998]
ATGAGTATCAGCAACACAGTATCCAAAGTTGAAGAGTTTGAATACGACAATGCGTCAGAGACGACCATTGATAACGAACT
CGAAAAATCATCATCTACTACCGAAGGCAAAACAGCTGTCCGTGAAGAGTTTGACGCGAGCAGTAAAAGCCTAGACGCAA
CTCAATTGTATCTAGGTGAAATTGGCTTCTCACCTCTACTTACTGCTGAAGAAGAAGTCCTTTACGCCCGCAGAGCATTG
CGTGGTGATGAAGCGGCTCGTAAGCGCATGATCGAAAGTAACTTGCGTTTAGTAGTAAAAATTTCTCGTCGGTACAGCAA
CCGTGGCCTAGCGCTACTCGATCTTATTGAAGAAGGTAACCTCGGTTTGATCCGAGCGGTTGAAAAATTCGATCCAGAAA
GAGGCTTCCGTTTCTCAACTTACGCAACATGGTGGATCCGTCAAACGATCGAACGTGCGTTGATGAACCAAACTCGCACC
ATTCGCTTGCCTATTCATGTCGTGAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAAAAGCTCGATCA
TGAACCAACTGCAGAAGAAATTGCTGCTCAATTAGATATACCAGTCGAAGATGTCAGCAAAATGTTGCGTCTTAACGAGC
GTATTAGCTCCGTTGATACCCCAATTGGTGGTGACGGTGAAAAAGCGCTTCTGGATATTATTCCTGACGCAAACAACTCT
GATCCAGAAGTGTCGACTCAAGATGATGACATCAAATCGTCTTTGATCCATTGGTTGGAAGAGTTGAATCCAAAACAAAA
AGAAGTGCTTGCACGCCGTTTTGGTTTGCTTGGCTATGAGCCGTCTACTCTTGAAGAAGTGGGACGAGAGATTGGTCTTA
CCCGTGAGCGTGTACGTCAAATTCAAGTGGAGGGTTTACGTCGACTTCGTGAAATCCTAATTAAACAAGGCCTAAATATG
GAAAACTTGTTTAACGTCGAAGACGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (52-85)

• Sigma-70 region 2 (Sigma70_r2) (90-159)

• Sigma-70, region 4 (Sigma70_r4) (258-311)

• Sigma-70 region 3 (Sigma70_r3) (170-243)

3D structure

• AlphaFold DB: A8D8R0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.832	100	0.851