Detailed information NTG0486456

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: IF561_RS11950
• Genome accession: NZ_CP062150
• Coordinates: 2542778..2543785 (+)
• Length: 335 a.a.
• NCBI ID: WP_005481416.1
• Uniprot ID: A0A072GUT1
• Organism: Vibrio parahaemolyticus strain 19-VB00998
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 2537778..2548785

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IF561_RS11930 (IF561_11920)	rplC	2538312..2538941 (-)	630	WP_005456132.1	50S ribosomal protein L3	-
IF561_RS11935 (IF561_11925)	rpsJ	2538956..2539267 (-)	312	WP_004410492.1	30S ribosomal protein S10	-
IF561_RS11940 (IF561_11930)	rpmE	2539725..2539946 (-)	222	WP_005457203.1	50S ribosomal protein L31	-
IF561_RS11945 (IF561_11935)	priA	2540241..2542445 (+)	2205	WP_264400785.1	primosomal protein N'	-
IF561_RS11950 (IF561_11940)	cytR	2542778..2543785 (+)	1008	WP_005481416.1	DNA-binding transcriptional regulator CytR	Regulator
IF561_RS11955 (IF561_11945)	ftsN	2543961..2544506 (+)	546	WP_024703418.1	cell division protein FtsN	-
IF561_RS11960 (IF561_11950)	hslV	2544670..2545221 (+)	552	WP_005489705.1	ATP-dependent protease subunit HslV	-
IF561_RS11965 (IF561_11955)	hslU	2545245..2546576 (+)	1332	WP_005489452.1	HslU--HslV peptidase ATPase subunit	-
IF561_RS11970 (IF561_11960)	-	2546761..2547678 (+)	918	WP_005457195.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
IF561_RS11975 (IF561_11965)	rraA	2547755..2548267 (+)	513	WP_005457192.1	ribonuclease E activity regulator RraA	-
IF561_RS11980 (IF561_11970)	zapB	2548372..2548614 (-)	243	WP_005481417.1	cell division protein ZapB	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 36835.35 Da
• Isoelectric Point: 6.4938

>NTDB_id=486456 IF561_RS11950 WP_005481416.1 2542778..2543785(+) (cytR) [Vibrio parahaemolyticus strain 19-VB00998]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEDAVLEAGYSPNSLARNLRRNESKTIVTIVPDICDPYFSEIIRG
IEDAAMEHGYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQLGHKRIAQISGPDTAVLCQFRQQGYQQALRRAGISKDPQYSVITEFSFDGGAKAVRKLLELPEPPTA
IFCHCDTMAIGAIQEAKRLGLRVPQDLSVVGFDDINFAQYCDPPLTTISQPRYEIGRQAMLMMLELLKGHDVHSGSRLLE
TKLVVRGSAAPPQRA

Nucleotide

• Length: 1008 bp

>NTDB_id=486456 IF561_RS11950 WP_005481416.1 2542778..2543785(+) (cytR) [Vibrio parahaemolyticus strain 19-VB00998]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCGGGAGTGTCGACAGCTACGGTATCTCGAGCATTAATGAATCCAGAAAA
AGTCTCTTCTTCAACAAGAAAAAGAGTCGAAGATGCCGTCCTTGAAGCGGGCTATTCTCCAAATTCATTAGCGCGTAATC
TACGTAGAAACGAATCAAAAACGATTGTTACCATCGTTCCTGACATCTGTGATCCTTACTTTTCTGAAATCATTCGTGGT
ATCGAAGACGCCGCTATGGAACATGGCTACCTCGTACTGCTCGGTGACAGCGGCCAGCAGAAAAAGCGTGAAAGCTCGTT
TGTGAATCTAGTGTTCACCAAACAAGCCGATGGCATGTTACTGCTTGGTACCGACCTGCCATTTGATGTCAGCAAGCCAG
AACAGAAAAACCTGCCACCAATGGTCATGGCTTGTGAGTTTGCGCCAGAGCTAGAATTACCAACCGTGCACATTGACAAC
CTAACGTCTGCTTTTGAAGCGGTCAATTACCTAACTCAACTTGGCCATAAACGCATAGCACAAATTTCAGGGCCAGACAC
AGCGGTATTGTGCCAGTTCCGCCAGCAAGGTTATCAACAAGCCTTGCGTCGCGCGGGGATCAGTAAAGACCCACAATACA
GCGTTATCACTGAGTTTTCTTTTGACGGCGGCGCGAAAGCTGTACGTAAGTTGCTAGAACTTCCAGAGCCACCAACTGCG
ATTTTCTGCCACTGTGACACCATGGCAATCGGCGCAATCCAAGAAGCGAAACGACTCGGTCTGCGCGTTCCGCAAGATCT
GTCAGTGGTTGGTTTCGATGATATCAACTTTGCTCAATACTGCGATCCACCGTTAACAACCATTTCTCAACCTCGTTATG
AAATTGGCCGCCAAGCGATGCTTATGATGCTTGAACTCCTTAAAGGCCATGACGTTCATTCAGGTTCACGCTTACTAGAA
ACTAAGCTTGTTGTCCGTGGTAGCGCAGCGCCACCGCAACGCGCCTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory proteins, lacI family (LacI) (3-48)

• Periplasmic binding protein-like domain (Peripla_BP_3) (168-328)

3D structure

• AlphaFold DB: A0A072GUT1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	100	100	1
cytR	Vibrio cholerae C6706	90.719	99.701	0.904