Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   J7D36_RS09935 Genome accession   NZ_CP073060
Coordinates   2117458..2118093 (-) Length   211 a.a.
NCBI ID   WP_000264037.1    Uniprot ID   A0ABX6CFI5
Organism   Acinetobacter baumannii strain DETAB-P39     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2112458..2123093
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J7D36_RS09910 (J7D36_09910) - 2112514..2113494 (-) 981 WP_001075416.1 DNA polymerase III subunit delta' -
  J7D36_RS09915 (J7D36_09915) kdsB 2113506..2114267 (-) 762 WP_004835301.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  J7D36_RS09920 (J7D36_09920) lpxK 2114277..2115287 (-) 1011 WP_021510830.1 tetraacyldisaccharide 4'-kinase -
  J7D36_RS09925 (J7D36_09925) msbA 2115290..2117017 (-) 1728 WP_004835304.1 lipid A export permease/ATP-binding protein MsbA -
  J7D36_RS09930 (J7D36_09930) - 2117014..2117442 (-) 429 WP_000669686.1 ExbD/TolR family protein -
  J7D36_RS09935 (J7D36_09935) exbB 2117458..2118093 (-) 636 WP_000264037.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  J7D36_RS09940 (J7D36_09940) - 2118143..2119030 (-) 888 WP_000023429.1 ParB/RepB/Spo0J family partition protein -
  J7D36_RS09945 (J7D36_09945) - 2119027..2119809 (-) 783 WP_000057212.1 ParA family protein -
  J7D36_RS09950 (J7D36_09950) rsmG 2119831..2120463 (-) 633 WP_000553193.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  J7D36_RS09955 (J7D36_09955) murU 2120551..2121240 (-) 690 WP_021510831.1 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU -
  J7D36_RS09960 (J7D36_09960) - 2121240..2122253 (-) 1014 WP_001096105.1 aminoglycoside phosphotransferase family protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23198.10 Da        Isoelectric Point: 6.4861

>NTDB_id=486337 J7D36_RS09935 WP_000264037.1 2117458..2118093(-) (exbB) [Acinetobacter baumannii strain DETAB-P39]
MWELVKAGGWLMLPLILCSILTVAISIERFVRLRRSQVLPKVLMNDGSADISVVITNLEQDTNAQSTALGNILKAGFEHQ
EHGEQFARAQMEAMASQEISYLEKNINFLGTLSAIAPLLGLLGTVVGIIESFLVIDFGSAGSPSLMIPGISKALITTAVG
MLIAIPALISYRYFQRVVQDYIAELEQQSTLFHASLFYKRSSVMQEHRRVG

Nucleotide


Download         Length: 636 bp        

>NTDB_id=486337 J7D36_RS09935 WP_000264037.1 2117458..2118093(-) (exbB) [Acinetobacter baumannii strain DETAB-P39]
ATGTGGGAACTTGTGAAAGCGGGCGGCTGGTTAATGCTGCCTTTAATTTTGTGTTCAATTTTAACCGTCGCAATTAGTAT
TGAGCGTTTTGTACGTTTAAGACGTTCACAAGTTTTACCTAAAGTACTAATGAATGATGGCAGTGCAGATATTTCTGTTG
TCATAACAAATTTGGAACAGGATACTAATGCGCAAAGCACGGCATTGGGCAATATTCTAAAAGCTGGTTTTGAGCATCAG
GAACATGGCGAACAATTTGCTCGAGCACAAATGGAAGCTATGGCTTCTCAAGAAATTTCTTATTTAGAAAAAAATATTAA
CTTCTTAGGGACCTTAAGTGCTATAGCGCCGCTACTAGGGCTGCTTGGAACAGTTGTGGGAATTATTGAGTCTTTTTTGG
TTATTGATTTTGGTTCGGCAGGTAGTCCTAGTTTAATGATTCCCGGTATTTCCAAGGCTTTGATCACAACAGCAGTTGGT
ATGCTCATTGCAATTCCTGCACTTATTTCCTATCGATATTTTCAAAGAGTAGTGCAAGATTATATTGCTGAGTTAGAGCA
ACAATCGACGCTATTTCATGCCTCATTGTTTTACAAACGTTCTTCAGTCATGCAAGAACATCGCCGCGTTGGTTGA

Domains

Predicted by InterProScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

43.455

90.521

0.393