Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   J7D36_RS04445 Genome accession   NZ_CP073060
Coordinates   925950..927338 (-) Length   462 a.a.
NCBI ID   WP_000048860.1    Uniprot ID   A0A059ZI65
Organism   Acinetobacter baumannii strain DETAB-P39     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 920950..932338
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J7D36_RS04420 (J7D36_04420) fdhD 921382..922173 (+) 792 WP_000187643.1 formate dehydrogenase accessory sulfurtransferase FdhD -
  J7D36_RS04425 (J7D36_04425) - 922293..922685 (+) 393 WP_000119198.1 YkvA family protein -
  J7D36_RS04430 (J7D36_04430) - 922790..923857 (+) 1068 WP_021511089.1 4-phosphoerythronate dehydrogenase -
  J7D36_RS04435 (J7D36_04435) epmA 923854..924828 (+) 975 WP_212257927.1 EF-P lysine aminoacylase EpmA -
  J7D36_RS04440 (J7D36_04440) - 924887..925867 (-) 981 WP_000451853.1 Tim44 domain-containing protein -
  J7D36_RS04445 (J7D36_04445) radA/sms 925950..927338 (-) 1389 WP_000048860.1 DNA repair protein RadA Machinery gene
  J7D36_RS04450 (J7D36_04450) - 927828..929234 (+) 1407 WP_000070815.1 amino acid permease -
  J7D36_RS04455 (J7D36_04455) lptM 929375..929599 (+) 225 WP_001255198.1 LPS translocon maturation chaperone LptM -
  J7D36_RS04460 (J7D36_04460) lysA 929622..930872 (+) 1251 WP_000011144.1 diaminopimelate decarboxylase -
  J7D36_RS04465 (J7D36_04465) dapF 930878..931723 (+) 846 WP_000923480.1 diaminopimelate epimerase -

Sequence

Protein


Download         Length: 462 a.a.        Molecular weight: 49728.19 Da        Isoelectric Point: 7.4015

>NTDB_id=486318 J7D36_RS04445 WP_000048860.1 925950..927338(-) (radA/sms) [Acinetobacter baumannii strain DETAB-P39]
MSKVKTVYRCEQCGADHLKWAGQCSECGEWNCLNEVKLEPTTAHRARPKVGGYAGQVANITTLNKVSVSHETRLPTGISE
FDRVLGGGLVTGSVVLIGGDPGIGKSTILLQTATHMASAKSSALYITGEESLSQVALRAQRLDLPTDQLKVMAETCVERI
CEVLEQERPVVAILDSIQTLYTETLQSAPGGVSQIRESAALLTRYAKNSGTALFIVGHVTKEGALAGPRVLEHMVDCVLY
FEGQSDSRYRMIRAVKNRFGAVNELGVFGMTDKGLREVANPSAIFLSRYDEAIPGSIVMISREGTRPLLVEVQALVDDAQ
GQPRRVALGLEQNRLNMLLAVMHRHGGVQTTGQDVYVNIVGGLKITETGSDLAVLLACASSLRTKALPQQLAVFGEVGLS
GEIRPVPNGQERLKEAAKHGFKYVILPRGNAPQKAIPGVQVIAVARLHEALTEAMQLSDELT

Nucleotide


Download         Length: 1389 bp        

>NTDB_id=486318 J7D36_RS04445 WP_000048860.1 925950..927338(-) (radA/sms) [Acinetobacter baumannii strain DETAB-P39]
ATGAGCAAAGTCAAAACCGTTTACCGTTGCGAGCAATGTGGTGCCGATCATCTAAAATGGGCAGGTCAATGTTCAGAGTG
TGGTGAATGGAATTGTCTTAATGAAGTCAAACTAGAACCTACTACTGCTCATCGTGCACGTCCTAAAGTTGGGGGTTATG
CGGGTCAAGTCGCCAATATTACAACGCTTAATAAAGTCTCTGTTTCTCATGAAACCCGTTTACCAACAGGCATTAGCGAA
TTTGACCGTGTGCTTGGTGGTGGCTTGGTGACAGGTTCTGTAGTACTCATTGGTGGTGACCCAGGTATTGGTAAATCGAC
CATTCTTTTACAAACAGCAACTCATATGGCAAGTGCAAAAAGTTCTGCGCTTTATATTACGGGTGAGGAATCGCTGTCAC
AGGTTGCCTTACGTGCCCAACGCCTTGACCTACCAACAGACCAGTTAAAAGTCATGGCTGAAACTTGTGTCGAACGCATT
TGTGAAGTTTTAGAACAAGAACGTCCTGTTGTCGCAATTTTGGACTCTATCCAAACGCTTTACACAGAAACGCTTCAATC
TGCGCCGGGTGGGGTTTCACAAATTCGTGAATCTGCTGCGTTATTAACCCGTTATGCGAAAAATAGTGGCACAGCGCTAT
TTATTGTTGGTCACGTGACCAAAGAAGGTGCATTGGCAGGTCCTCGTGTTTTAGAACACATGGTGGACTGCGTACTTTAC
TTTGAAGGCCAATCAGACTCACGTTATCGAATGATTCGTGCAGTGAAAAACCGTTTTGGTGCAGTCAATGAGCTTGGTGT
ATTTGGCATGACCGATAAAGGCTTACGTGAAGTGGCTAACCCTTCTGCTATATTTTTAAGTCGTTATGACGAAGCCATTC
CCGGTTCAATTGTCATGATCAGCCGTGAAGGAACTCGCCCGCTTTTAGTTGAAGTTCAGGCTTTAGTCGATGATGCTCAA
GGACAACCAAGACGTGTTGCACTTGGTCTTGAACAAAACCGTTTAAACATGCTGCTTGCTGTTATGCATCGTCATGGTGG
TGTACAAACCACCGGACAAGACGTGTATGTCAATATTGTAGGTGGTTTAAAAATTACCGAAACAGGTTCGGACTTGGCTG
TTTTACTTGCATGTGCTTCGAGTTTACGAACAAAAGCCTTACCTCAGCAGCTTGCAGTTTTTGGTGAAGTTGGTCTTTCA
GGTGAAATCCGACCTGTACCTAATGGTCAGGAACGTTTAAAAGAAGCAGCAAAACATGGCTTTAAATACGTCATCTTACC
AAGAGGTAACGCCCCGCAAAAAGCAATTCCGGGCGTACAAGTGATTGCAGTTGCCCGCCTGCATGAAGCCTTGACTGAGG
CGATGCAACTTAGTGATGAATTGACATAA

Domains

Predicted by InterProScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

KaiC (ATPase)

(75-150)

Subunit ChlI of Mg-chelatase (ChlI)

(346-430)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A059ZI65

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

46.171

98.918

0.457
  radA Streptococcus mitis NCTC 12261

43.043

99.567

0.429
  radA Streptococcus pneumoniae D39

42.67

98.918

0.422
  radA Streptococcus pneumoniae TIGR4

42.67

98.918

0.422
  radA Streptococcus mitis SK321

42.67

98.918

0.422
  radA Streptococcus pneumoniae R6

42.67

98.918

0.422
  radA Streptococcus pneumoniae Rx1

42.67

98.918

0.422