Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   IFI77_RS06580 Genome accession   NZ_CP062127
Coordinates   1293169..1294860 (+) Length   563 a.a.
NCBI ID   WP_003738883.1    Uniprot ID   A0A0B8RFK2
Organism   Listeria monocytogenes FSL J1-208     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1288169..1299860
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IFI77_RS06555 (IFI77_06555) - 1288320..1289201 (+) 882 WP_003738880.1 polyprenyl synthetase family protein -
  IFI77_RS06560 (IFI77_06560) - 1289400..1289600 (+) 201 WP_003719639.1 cold-shock protein -
  IFI77_RS06565 (IFI77_06565) dxs 1289767..1291686 (+) 1920 WP_077905678.1 1-deoxy-D-xylulose-5-phosphate synthase -
  IFI77_RS06570 (IFI77_06570) - 1291683..1292507 (+) 825 WP_003738882.1 TlyA family RNA methyltransferase -
  IFI77_RS06575 (IFI77_06575) ahrC 1292697..1293146 (+) 450 WP_003722493.1 transcriptional regulator AhrC/ArgR -
  IFI77_RS06580 (IFI77_06580) recN 1293169..1294860 (+) 1692 WP_003738883.1 DNA repair protein RecN Machinery gene
  IFI77_RS06585 (IFI77_06585) - 1294990..1295856 (+) 867 WP_003738885.1 phosphate acyltransferase -
  IFI77_RS06590 (IFI77_06590) buk 1295993..1297060 (+) 1068 WP_003738886.1 butyrate kinase -
  IFI77_RS06595 (IFI77_06595) lpdA 1297075..1298502 (+) 1428 WP_003738887.1 dihydrolipoyl dehydrogenase -
  IFI77_RS06600 (IFI77_06600) - 1298527..1299522 (+) 996 WP_003738888.1 thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha -

Sequence

Protein


Download         Length: 563 a.a.        Molecular weight: 63518.26 Da        Isoelectric Point: 5.1296

>NTDB_id=486280 IFI77_RS06580 WP_003738883.1 1293169..1294860(+) (recN) [Listeria monocytogenes FSL J1-208]
MLQEMTIKNFAIIESLSLTFQEGMTVLTGETGAGKSIIIDALGLLVGGRGSADFIRHGEERLELQGLFALAEDNLACRNA
LIENGIDASDDMVVLERSLFRSGKNSCRINGKLVTTVLLRQIGSKLIDIHSQHEHQELMNEEFHLSLLDRFASDKIKPAL
TKYQTNFKEYQTIEKEWQNWTKNERELAQRLDMLRFQQQEIENANLQAGEEDRLLEQKNILANFEKLNENLQGAYAAIQG
EPGGLEFVGEAMRQMEAAASIHTDYKAVSEAISSSYYMLEDSMSQIRQSLDQLEFQPEELNQIESRLNDLNQLKRKYGKT
IEDIIQYEQEISSEMEKLTDSESHVGHLETKLATLKAELTKQANTLTEIRKKAAVTLEKQIKQELNHLYMEKAIFSVRFE
ANKMELTDSGQDSVVFYMSTNPGEPLKPLAKIASGGELSRMMLALKTIFSRHQGITSIIFDEVDTGVSGRVGQAIAEKIY
AVSVGSQVLCISHLPQVAAMANHHYYITKKVQNKRTTTSVTVLKGEEKVEEISRMIAGIEVTELTKQHAKEMIEQAEKVK
QTY

Nucleotide


Download         Length: 1692 bp        

>NTDB_id=486280 IFI77_RS06580 WP_003738883.1 1293169..1294860(+) (recN) [Listeria monocytogenes FSL J1-208]
TTGCTTCAAGAAATGACAATTAAAAACTTTGCTATCATCGAATCGCTTTCTTTAACTTTTCAAGAAGGGATGACGGTACT
TACGGGGGAGACCGGCGCTGGTAAATCAATTATTATTGATGCGCTTGGTCTTCTTGTTGGCGGACGCGGATCAGCTGATT
TTATCCGTCACGGAGAGGAACGTTTAGAACTTCAAGGGCTTTTTGCGCTAGCAGAGGATAACCTTGCTTGCCGAAATGCT
TTAATAGAAAATGGGATAGATGCTTCGGATGATATGGTTGTACTAGAACGCAGCCTGTTTCGCTCGGGGAAAAATAGTTG
CCGAATTAATGGCAAGCTTGTAACTACAGTTCTCTTGCGCCAAATTGGCTCGAAATTAATAGATATCCACAGTCAGCATG
AACATCAGGAATTAATGAATGAGGAGTTTCATTTATCCTTACTTGATCGTTTCGCTTCTGACAAAATCAAGCCAGCATTA
ACCAAGTACCAAACTAATTTCAAAGAATATCAAACAATCGAGAAAGAGTGGCAAAATTGGACAAAAAATGAGCGAGAATT
AGCGCAACGTCTTGATATGCTCCGTTTTCAACAACAGGAAATCGAAAATGCCAATTTGCAAGCTGGTGAAGAAGATCGTT
TGTTAGAACAAAAAAATATTTTAGCCAATTTTGAAAAACTTAACGAAAATTTACAAGGAGCTTATGCCGCGATTCAAGGT
GAGCCTGGTGGGCTGGAATTTGTTGGCGAAGCAATGCGTCAAATGGAAGCAGCGGCGAGTATTCATACGGATTATAAAGC
GGTTAGCGAGGCCATTTCTTCTAGTTATTATATGTTAGAAGATAGCATGAGCCAAATTAGACAATCACTTGATCAGCTCG
AATTCCAACCAGAAGAACTGAATCAAATTGAATCACGTTTGAATGATTTAAACCAATTAAAACGCAAATATGGCAAAACC
ATTGAAGATATCATTCAATACGAACAAGAAATAAGCAGCGAAATGGAAAAACTGACAGATAGTGAATCACATGTCGGGCA
TTTAGAGACCAAATTAGCAACACTTAAAGCAGAACTAACAAAACAGGCGAATACACTAACGGAAATCCGTAAAAAAGCGG
CTGTAACGTTAGAAAAGCAAATCAAACAAGAATTAAATCACTTATATATGGAGAAAGCCATTTTTAGTGTACGCTTTGAA
GCAAATAAAATGGAACTAACAGATTCAGGGCAAGATAGCGTTGTTTTCTATATGTCAACCAACCCGGGTGAACCTTTAAA
ACCATTAGCAAAAATCGCTTCGGGTGGAGAGTTATCTAGAATGATGTTAGCATTAAAAACCATTTTTTCTAGGCACCAAG
GTATCACCTCGATTATTTTCGATGAAGTAGATACTGGTGTAAGTGGTCGCGTTGGTCAAGCGATTGCAGAAAAAATTTAT
GCTGTTTCAGTTGGATCGCAAGTACTATGCATTAGCCATTTGCCTCAAGTTGCAGCAATGGCGAACCACCACTACTACAT
TACGAAAAAAGTTCAAAACAAACGGACCACAACTTCCGTTACAGTGCTTAAAGGGGAAGAAAAAGTAGAAGAAATCAGTC
GAATGATTGCTGGAATAGAAGTTACCGAATTAACTAAACAACATGCAAAAGAAATGATTGAACAAGCGGAAAAAGTAAAA
CAAACGTATTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-513)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0B8RFK2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

52.257

100

0.535