Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   IFI77_RS01175 Genome accession   NZ_CP062127
Coordinates   244437..245810 (+) Length   457 a.a.
NCBI ID   WP_003729197.1    Uniprot ID   A0A0E0USD9
Organism   Listeria monocytogenes FSL J1-208     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 239437..250810
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IFI77_RS01155 (IFI77_01155) - 239791..240249 (+) 459 WP_003723894.1 CtsR family transcriptional regulator -
  IFI77_RS01160 (IFI77_01160) - 240262..240780 (+) 519 WP_003737954.1 UvrB/UvrC motif-containing protein -
  IFI77_RS01165 (IFI77_01165) - 240777..241799 (+) 1023 WP_003737955.1 protein arginine kinase -
  IFI77_RS01170 (IFI77_01170) - 241828..244290 (+) 2463 WP_003737956.1 ATP-dependent Clp protease ATP-binding subunit -
  IFI77_RS01175 (IFI77_01175) radA 244437..245810 (+) 1374 WP_003729197.1 DNA repair protein RadA Machinery gene
  IFI77_RS01180 (IFI77_01180) - 245944..247017 (+) 1074 WP_003737958.1 PIN/TRAM domain-containing protein -
  IFI77_RS01185 (IFI77_01185) ispD 247037..247735 (+) 699 WP_003737959.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  IFI77_RS01190 (IFI77_01190) ispF 247728..248201 (+) 474 WP_003737960.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  IFI77_RS01195 (IFI77_01195) gltX 248220..249695 (+) 1476 WP_003737961.1 glutamate--tRNA ligase -
  IFI77_RS01200 (IFI77_01200) epsC 250093..250707 (+) 615 WP_003737962.1 serine O-acetyltransferase EpsC -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 50006.64 Da        Isoelectric Point: 7.6580

>NTDB_id=486271 IFI77_RS01175 WP_003729197.1 244437..245810(+) (radA) [Listeria monocytogenes FSL J1-208]
MAKAKRTTKFVCQACGYESAKWMGKCPNCNEWNQMVEALEPSKKSRSAFNHTGEPSKATPITQIESETEKRVETNMPELN
RVLGGGVVPGSMVLVGGDPGIGKSTLLLQVSAQLTLTNKKVLYISGEESIKQTKLRAERLQVSGDNLYVYAETNLEAVQE
TIDFVKPDFVVIDSIQTVYHPDVTSAAGSVSQVRECTAALMRIAKMQNIAIFIVGHVTKEGAIAGPRLLEHMVDTVLYFE
GERHHAYRILRAVKNRFGSTNEMGIFEMRDVGLVEVANPSEVFLEERLEGASGSTVVASMEGTRPVLVEIQALVSPTMFG
NAKRMATGIDYNKVSLIMAVLEKRVGLMLQNQDAYLKAAGGVKLDEPAVDLAVAVSVASSYRDKPTRSTDCFIGELGLTG
EIRRVARIEQRVQEAAKLGFKRIFIPKNNEGTWKIPKDVQVVGVETIGEALKKALPD

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=486271 IFI77_RS01175 WP_003729197.1 244437..245810(+) (radA) [Listeria monocytogenes FSL J1-208]
ATGGCTAAAGCAAAAAGGACAACCAAATTTGTGTGTCAGGCATGTGGATATGAATCGGCTAAATGGATGGGAAAATGTCC
GAATTGCAATGAGTGGAATCAGATGGTAGAAGCTTTGGAGCCATCAAAAAAATCGCGCTCAGCTTTTAATCATACTGGAG
AGCCTTCGAAAGCGACTCCAATTACTCAAATAGAAAGTGAAACAGAAAAACGGGTTGAAACAAATATGCCGGAGTTAAAT
AGAGTCCTCGGTGGTGGTGTGGTTCCAGGATCTATGGTACTTGTCGGGGGCGATCCTGGTATCGGGAAGTCGACATTATT
ATTACAAGTTTCAGCTCAACTCACGCTCACGAATAAAAAAGTATTGTATATCTCAGGAGAAGAATCTATCAAACAAACGA
AGCTACGTGCAGAACGTTTGCAAGTTTCGGGAGATAATTTATATGTATATGCAGAAACAAATTTAGAAGCAGTTCAAGAA
ACGATTGATTTTGTGAAGCCGGATTTTGTAGTCATTGATTCTATTCAGACCGTTTATCATCCGGATGTTACGAGTGCGGC
AGGGAGTGTTTCGCAGGTTAGGGAATGTACAGCAGCATTGATGCGAATTGCCAAAATGCAAAACATTGCTATCTTTATTG
TTGGGCATGTAACGAAGGAAGGCGCAATTGCGGGACCGCGCCTGCTTGAACATATGGTTGATACAGTACTTTATTTTGAA
GGGGAGCGTCATCATGCTTACCGGATTTTGCGTGCAGTGAAAAACCGTTTTGGTTCCACTAACGAAATGGGTATATTTGA
AATGCGAGATGTTGGACTTGTTGAAGTTGCTAATCCTTCCGAAGTATTCTTGGAAGAACGTCTTGAAGGCGCTTCGGGCT
CAACGGTTGTAGCTTCTATGGAAGGGACTCGTCCAGTTCTTGTGGAAATTCAAGCGCTTGTTTCACCTACGATGTTTGGT
AATGCTAAGCGAATGGCGACAGGAATAGACTATAATAAAGTTTCGCTAATTATGGCCGTTTTAGAAAAAAGAGTTGGATT
AATGCTGCAAAATCAAGATGCTTATTTGAAAGCAGCGGGTGGGGTTAAACTTGATGAACCTGCAGTGGATTTGGCAGTTG
CAGTAAGTGTGGCATCTAGTTATCGTGATAAACCAACGAGAAGCACAGATTGCTTTATCGGAGAACTTGGACTTACAGGT
GAAATTCGTCGAGTAGCAAGAATTGAACAACGCGTGCAAGAAGCGGCGAAACTAGGATTTAAACGGATTTTCATTCCGAA
AAATAATGAAGGTACTTGGAAAATACCGAAAGATGTGCAAGTGGTTGGCGTGGAAACGATTGGAGAAGCTTTGAAGAAGG
CTTTACCAGATTGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(10-37)

Subunit ChlI of Mg-chelatase (ChlI)

(363-429)

AAA domain (AAA_25)

(63-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0E0USD9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

68.64

99.781

0.685
  radA Streptococcus pneumoniae Rx1

65.265

98.906

0.646
  radA Streptococcus pneumoniae D39

65.265

98.906

0.646
  radA Streptococcus pneumoniae R6

65.265

98.906

0.646
  radA Streptococcus pneumoniae TIGR4

65.265

98.906

0.646
  radA Streptococcus mitis NCTC 12261

65.265

98.906

0.646
  radA Streptococcus mitis SK321

65.044

98.906

0.643