Detailed information NTG0486267

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: KBZ93_RS10370
• Genome accession: NZ_CP073017
• Coordinates: 2203062..2204276 (+)
• Length: 404 a.a.
• NCBI ID: WP_014407124.1
• Uniprot ID: -
• Organism: Synechocystis sp. PCC 6803
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2198062..2209276

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KBZ93_RS10360 (KBZ93_10370)	-	2200052..2201455 (-)	1404	WP_010873186.1	efflux RND transporter periplasmic adaptor subunit	-
KBZ93_RS10365 (KBZ93_10375)	pilT	2201849..2202958 (+)	1110	WP_010873187.1	type IV pilus twitching motility protein PilT	Machinery gene
KBZ93_RS10370 (KBZ93_10380)	pilC	2203062..2204276 (+)	1215	WP_014407124.1	type II secretion system F family protein	Machinery gene
KBZ93_RS10375 (KBZ93_10385)	-	2204678..2205355 (+)	678	WP_010873190.1	ATP-dependent Clp protease proteolytic subunit	-
KBZ93_RS10380 (KBZ93_10390)	-	2205455..2206063 (+)	609	WP_010873191.1	ATP-dependent Clp protease proteolytic subunit	-
KBZ93_RS10385 (KBZ93_10395)	-	2206274..2207599 (-)	1326	WP_010873192.1	aminopeptidase P N-terminal domain-containing protein	-
KBZ93_RS10390 (KBZ93_10400)	-	2207682..2208662 (-)	981	WP_010873193.1	S-methyl-5'-thioadenosine phosphorylase	-
KBZ93_RS10395 (KBZ93_10405)	-	2208607..2208843 (-)	237	WP_010873194.1	DUF3134 domain-containing protein	-
KBZ93_RS10400 (KBZ93_10410)	-	2208910..2209065 (-)	156	WP_010873195.1	ribbon-helix-helix domain-containing protein	-

Sequence

Protein

• Length: 404 a.a.
• Molecular weight: 43793.74 Da
• Isoelectric Point: 5.2932

>NTDB_id=486267 KBZ93_RS10370 WP_014407124.1 2203062..2204276(+) (pilC) [Synechocystis sp. PCC 6803]
MATFVAQVKDRKGKTTKAKVEAMSPEQARTILRQQYAAIGPIKPAGGEINLEFLENLLNNVSVKDKAVFSRQFSVMINAG
VAIVRCLGVLSEQCPNPKLKRALTGISGEVQQGTNLSEAMGKYPECFDDLYVSMVEAGETGGVLDEVLNRLSKLLEDMAR
LQNQIKSAMAYPVAVGFLAVVAFLGMTIFLIPVFAGIFDDLGGELPALTKFMVGLSNFLRSPMAVIPVIVIVVAVFLFKK
YYGTYAGRRQVDAVMLKLPLFGPLNEKTAVARFCRVFGTLTRSGVPIIQSLEIVCNTVPNKVISDAIAGAISEIQQGGMM
SLALQQSKVFPSLAIQMISIGEETGELDAMMMKVADFYEDEVEQTVKALTSIIEPAMMVLIAGMVGTILLSMYLPMFAIF
DQLG

Nucleotide

• Length: 1215 bp

>NTDB_id=486267 KBZ93_RS10370 WP_014407124.1 2203062..2204276(+) (pilC) [Synechocystis sp. PCC 6803]
ATGGCTACGTTTGTCGCTCAAGTTAAAGATCGTAAAGGTAAAACCACCAAAGCCAAGGTGGAAGCCATGAGTCCAGAACA
GGCTCGTACCATCCTCCGCCAACAATACGCGGCGATCGGCCCCATTAAGCCAGCCGGAGGGGAAATAAACCTCGAATTCC
TGGAAAATTTACTTAACAACGTTAGTGTCAAGGACAAAGCGGTTTTCTCCCGACAGTTTTCCGTCATGATCAACGCTGGC
GTGGCGATCGTTCGTTGTTTGGGGGTGCTGTCGGAACAATGTCCTAATCCCAAACTGAAAAGGGCATTAACGGGTATTAG
TGGGGAAGTTCAACAGGGCACTAACCTTTCTGAAGCCATGGGCAAATATCCCGAATGTTTTGATGACCTCTACGTCAGCA
TGGTGGAAGCAGGGGAAACGGGGGGGGTTTTAGACGAAGTTCTCAACCGACTTTCCAAACTGCTGGAAGACATGGCCCGT
CTGCAAAACCAAATTAAATCCGCCATGGCTTATCCGGTGGCAGTAGGTTTCTTGGCGGTGGTGGCTTTTCTCGGTATGAC
CATCTTCCTCATCCCTGTCTTTGCGGGAATTTTTGATGACCTGGGGGGAGAACTGCCCGCTTTAACCAAATTTATGGTCG
GCCTAAGTAACTTTTTAAGAAGTCCAATGGCCGTCATCCCCGTAATTGTTATTGTGGTTGCCGTTTTTCTATTCAAAAAA
TATTACGGAACCTATGCTGGGCGGCGACAAGTCGATGCGGTGATGTTGAAACTACCTTTGTTTGGTCCCCTGAATGAAAA
AACCGCTGTAGCTAGGTTTTGCCGGGTATTTGGCACCCTTACCCGTTCGGGGGTTCCCATTATTCAGTCTTTGGAAATTG
TTTGTAATACTGTGCCCAATAAAGTGATTTCCGATGCGATCGCCGGGGCTATTAGTGAAATTCAACAGGGGGGCATGATG
AGTTTGGCTCTGCAACAAAGTAAGGTTTTCCCCTCTTTGGCGATTCAAATGATTAGTATTGGGGAAGAAACGGGGGAACT
GGATGCCATGATGATGAAAGTGGCGGACTTCTATGAAGACGAAGTAGAACAAACCGTCAAAGCGTTGACTAGTATTATAG
AACCAGCTATGATGGTGCTGATTGCCGGTATGGTCGGGACAATTTTGCTTTCCATGTATCTACCCATGTTTGCCATCTTT
GATCAGTTAGGTTAA

Domains

Predicted by InterProScan.

• Type II secretion system (T2SS), protein F (T2SSF) (69-192)

• Type II secretion system (T2SS), protein F (T2SSF) (273-395)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Thermus thermophilus HB27	40.64	100	0.408