Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrB   Type   Machinery gene
Locus tag   IFI78_RS14345 Genome accession   NZ_CP062126
Coordinates   316663..316872 (+) Length   69 a.a.
NCBI ID   WP_014930816.1    Uniprot ID   -
Organism   Listeria monocytogenes strain FSL F6-0367     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Genomic Context

Location: 311663..321872
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IFI78_RS01500 (IFI78_01500) - 312194..313024 (+) 831 WP_003722911.1 MBL fold metallo-hydrolase -
  IFI78_RS01505 (IFI78_01505) htrA 313122..314627 (+) 1506 WP_014930814.1 serine protease HtrA -
  IFI78_RS01510 (IFI78_01510) rlmH 315314..315793 (+) 480 WP_008946708.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  IFI78_RS14275 - 316250..316681 (+) 432 WP_158423066.1 recombinase family protein -
  IFI78_RS14345 ccrB 316663..316872 (+) 210 WP_014930816.1 recombinase zinc beta ribbon domain-containing protein Machinery gene
  IFI78_RS14280 - 316901..317434 (+) 534 WP_014930817.1 hypothetical protein -
  IFI78_RS01520 (IFI78_01520) - 317574..318686 (-) 1113 WP_014600446.1 restriction endonuclease subunit S -
  IFI78_RS01525 (IFI78_01525) - 318679..320298 (-) 1620 WP_014600447.1 class I SAM-dependent DNA methyltransferase -

Sequence

Protein


Download         Length: 69 a.a.        Molecular weight: 7910.99 Da        Isoelectric Point: 10.3845

>NTDB_id=486263 IFI78_RS14345 WP_014930816.1 316663..316872(+) (ccrB) [Listeria monocytogenes strain FSL F6-0367]
MAANNVINRLKDGTKKRIRYYSCFQFRNKGASVCHANSIRADQAEQFVAERLKETVQHPQIIKEVNSST

Nucleotide


Download         Length: 210 bp        

>NTDB_id=486263 IFI78_RS14345 WP_014930816.1 316663..316872(+) (ccrB) [Listeria monocytogenes strain FSL F6-0367]
ATGGCAGCAAATAATGTGATCAATCGACTAAAGGATGGAACCAAAAAACGTATTCGGTATTATTCCTGTTTTCAATTTCG
AAATAAAGGAGCGAGTGTTTGCCATGCGAATTCAATCCGAGCAGATCAAGCAGAACAGTTTGTGGCTGAAAGGTTGAAGG
AAACCGTTCAACACCCACAAATTATAAAAGAAGTTAATTCAAGCACTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrB Staphylococcus aureus N315

58.462

94.203

0.551