Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   TL13_RS02400 Genome accession   NC_021213
Coordinates   469336..470112 (+) Length   258 a.a.
NCBI ID   WP_014637540.1    Uniprot ID   -
Organism   Streptococcus suis TL13     
Function   repressor of recA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 464336..475112
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TL13_RS02395 (TL13_0475) rlmD 467946..469298 (-) 1353 WP_041179377.1 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD -
  TL13_RS02400 (TL13_0476) recX 469336..470112 (+) 777 WP_014637540.1 recombination regulator RecX Regulator
  TL13_RS02405 (TL13_0477) - 470188..470721 (+) 534 WP_004194106.1 DUF402 domain-containing protein -
  TL13_RS02410 (TL13_0478) - 470779..471096 (+) 318 WP_002942715.1 DUF960 domain-containing protein -
  TL13_RS02415 (TL13_0479) - 471196..471927 (+) 732 WP_004194101.1 GntR family transcriptional regulator -
  TL13_RS02420 (TL13_0480) - 472067..472777 (-) 711 WP_015646515.1 GntR family transcriptional regulator -
  TL13_RS02425 (TL13_0481) - 472999..474771 (+) 1773 WP_015646516.1 glycoside hydrolase family 35 protein -

Sequence

Protein


Download         Length: 258 a.a.        Molecular weight: 30399.93 Da        Isoelectric Point: 9.2585

>NTDB_id=48624 TL13_RS02400 WP_014637540.1 469336..470112(+) (recX) [Streptococcus suis TL13]
MRITKIEKKKRLYLLEVDGQDSLYITEDTIVRFMLSKGKEITEQEFRELRDFAQFSYGKNLALYYLSFKQRTKKEVSDYL
KKYEIEENNIVKIVTVLEEEKWLDDGNYVDSYVRQNALNGDKGPAMIRQKLMQKGIPKPLIDKRLAEEDFSELAGKIGEK
LVGRYQRKLPLRALQDKVVQGLMGKGFSYETAKQSLGQLELVADEENEDDLIAKELDKQYRKYSRKYEGYELKQRLIQAL
ARKGYDFDRIQAVLRDYL

Nucleotide


Download         Length: 777 bp        

>NTDB_id=48624 TL13_RS02400 WP_014637540.1 469336..470112(+) (recX) [Streptococcus suis TL13]
ATGAGAATTACAAAAATTGAAAAGAAGAAACGTCTTTATTTACTTGAAGTGGATGGTCAGGATAGTTTATATATTACGGA
AGACACAATTGTTCGCTTCATGCTTAGTAAGGGCAAGGAAATCACGGAGCAGGAGTTTCGTGAGCTTCGCGATTTTGCTC
AATTTTCTTATGGGAAAAATCTAGCACTTTATTACCTTTCCTTCAAGCAACGTACCAAAAAAGAAGTTAGTGATTATCTA
AAAAAATATGAAATTGAAGAAAATAATATTGTCAAGATAGTGACGGTATTAGAAGAGGAAAAATGGCTGGACGATGGGAA
TTATGTTGATAGCTATGTTCGTCAGAATGCTCTAAATGGAGATAAGGGACCCGCTATGATTCGTCAGAAGTTGATGCAGA
AAGGAATTCCTAAACCGCTGATTGATAAAAGACTGGCTGAGGAAGATTTTTCAGAGCTTGCTGGGAAGATTGGGGAGAAA
TTGGTGGGTAGATACCAAAGAAAATTGCCTCTTCGAGCTTTGCAAGATAAAGTTGTACAGGGATTGATGGGGAAGGGTTT
TTCTTATGAGACGGCCAAACAAAGCCTGGGTCAGTTGGAACTTGTGGCTGATGAGGAAAATGAAGATGATTTAATTGCCA
AGGAACTGGATAAGCAGTATAGAAAATATAGTCGTAAATATGAAGGCTATGAATTGAAGCAAAGGTTGATACAGGCTTTG
GCTCGAAAGGGTTATGACTTTGATCGGATTCAGGCTGTCCTTCGTGATTATCTGTGA

Domains

Predicted by InterProScan.

RecX family (RecX_HTH2)

(80-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Staphylococcus aureus strain ATCC 12600

35.581

100

0.368

Multiple sequence alignment