Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   IG194_RS25745 Genome accession   NZ_CP062122
Coordinates   5646662..5647207 (+) Length   181 a.a.
NCBI ID   WP_043316300.1    Uniprot ID   A0A1A5D4Q2
Organism   Pseudomonas sp. ADPe     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5641662..5652207
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IG194_RS25730 (IG194_25740) - 5642752..5643837 (-) 1086 WP_058489137.1 type I restriction endonuclease -
  IG194_RS25735 (IG194_25745) - 5644110..5644952 (+) 843 WP_043266799.1 IclR family transcriptional regulator C-terminal domain-containing protein -
  IG194_RS25740 (IG194_25750) - 5646162..5646665 (+) 504 WP_082996327.1 GspH/FimT family pseudopilin -
  IG194_RS25745 (IG194_25755) pilV 5646662..5647207 (+) 546 WP_043316300.1 type IV pilus modification protein PilV Machinery gene
  IG194_RS25750 (IG194_25760) - 5647208..5647984 (+) 777 WP_058489138.1 PilW family protein -
  IG194_RS25755 (IG194_25765) - 5647981..5648526 (+) 546 WP_058489139.1 PilX N-terminal domain-containing pilus assembly protein -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 18948.63 Da        Isoelectric Point: 5.1557

>NTDB_id=486179 IG194_RS25745 WP_043316300.1 5646662..5647207(+) (pilV) [Pseudomonas sp. ADPe]
MTRRGLAGFSLIEVLVALLVICVGVLGMLAMQGRAIAYSQDMAVRGTAAALADELMETIRTDLYSAQDAGTPLTPPASSD
YYKATGRAFPAAPSSCASLASLSASQRLGCWAQRVQQALPDAASLMSSDFHICRSNGASTCSGTGSAIEIQLAWRVKSGE
CLEASPGSDPTICHYVLREEP

Nucleotide


Download         Length: 546 bp        

>NTDB_id=486179 IG194_RS25745 WP_043316300.1 5646662..5647207(+) (pilV) [Pseudomonas sp. ADPe]
ATGACGCGCCGTGGCCTGGCCGGCTTCAGCCTGATCGAAGTGCTGGTGGCGCTGCTGGTGATCTGCGTCGGCGTGCTGGG
CATGCTCGCCATGCAGGGCAGGGCGATCGCCTATTCCCAGGACATGGCGGTGCGCGGCACGGCGGCGGCGCTGGCCGACG
AGCTGATGGAGACCATCCGCACCGACCTCTATTCCGCCCAGGACGCCGGCACGCCGCTGACCCCGCCGGCCAGCTCCGAC
TACTACAAGGCCACCGGCAGAGCCTTCCCCGCAGCACCGAGCAGTTGTGCCTCGCTCGCTTCGCTGAGCGCCTCGCAGCG
CCTGGGCTGCTGGGCGCAGCGGGTGCAGCAGGCGCTGCCCGATGCCGCCAGCCTGATGAGCAGCGACTTCCACATCTGTC
GCAGCAACGGCGCCAGCACCTGCAGCGGCACCGGCTCGGCCATCGAGATCCAGCTGGCCTGGCGGGTGAAGTCCGGCGAG
TGCCTGGAGGCCAGCCCCGGCAGCGACCCGACCATCTGCCACTACGTGCTGCGCGAGGAGCCCTGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(7-28)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1A5D4Q2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

48.603

98.895

0.481