Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   IG194_RS17260 Genome accession   NZ_CP062122
Coordinates   3823065..3824438 (+) Length   457 a.a.
NCBI ID   WP_058070082.1    Uniprot ID   A0A1A5D892
Organism   Pseudomonas sp. ADPe     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3818065..3829438
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IG194_RS17235 (IG194_17245) - 3819267..3820043 (+) 777 WP_058488324.1 ferredoxin--NADP reductase -
  IG194_RS17240 (IG194_17250) - 3820232..3821785 (+) 1554 WP_058488325.1 TerC family protein -
  IG194_RS17245 (IG194_17255) mscL 3821803..3822216 (-) 414 WP_043268871.1 large-conductance mechanosensitive channel protein MscL -
  IG194_RS17250 (IG194_17260) - 3822407..3822649 (+) 243 WP_009613144.1 YdcH family protein -
  IG194_RS17255 (IG194_17265) - 3822727..3822969 (+) 243 WP_043268874.1 hypothetical protein -
  IG194_RS17260 (IG194_17270) radA 3823065..3824438 (+) 1374 WP_058070082.1 DNA repair protein RadA Machinery gene
  IG194_RS17265 (IG194_17275) - 3825175..3825546 (-) 372 WP_009613140.1 PilZ domain-containing protein -
  IG194_RS17270 (IG194_17280) - 3825965..3828031 (+) 2067 WP_009613139.1 carbon starvation CstA family protein -
  IG194_RS17275 (IG194_17285) - 3828047..3828250 (+) 204 WP_009613138.1 YbdD/YjiX family protein -
  IG194_RS17280 (IG194_17290) yjiA 3828326..3829306 (+) 981 WP_043268876.1 GTPase -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 48907.31 Da        Isoelectric Point: 6.8983

>NTDB_id=486167 IG194_RS17260 WP_058070082.1 3823065..3824438(+) (radA) [Pseudomonas sp. ADPe]
MAKAKRMYGCTECGATFPKWAGQCADCGAWNTLVETVLDTTPTGGSGSSGRGGWAGQQANIKTLAEVSVEEMPRFSTASN
ELDRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCSIANRMPALYVTGEESQQQVAMRARRLGLPEDKLKVMTETCIESI
IATARHEQPKVMVIDSIQTIFTEQLQSAPGGVAQVRESAALLVRFAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLY
FEGESDGRLRLLRAVKNRFGAVNELGVFAMTDRGLKEVSNPSAIFLTRAQESVPGSVVMATWEGSRPMLVEVQALVDTSH
LANPRRVTLGLDQNRLAMLLAVLHRHGGIPTYDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLDHQLLVFGEVGL
SGEVRPVPSGQERLKEAAKHGFKRAIVPQGNAPKEAPPGLQVIPVTRLEQALDALFE

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=486167 IG194_RS17260 WP_058070082.1 3823065..3824438(+) (radA) [Pseudomonas sp. ADPe]
ATGGCCAAGGCCAAGCGCATGTACGGCTGCACCGAGTGCGGCGCCACCTTCCCCAAATGGGCCGGCCAGTGCGCCGACTG
CGGCGCCTGGAACACCCTGGTGGAGACCGTTCTCGACACCACGCCTACCGGCGGCTCCGGCAGTTCCGGACGCGGCGGCT
GGGCCGGGCAGCAGGCCAACATCAAGACCCTGGCGGAAGTCAGCGTCGAGGAGATGCCGCGCTTCAGCACCGCCTCCAAC
GAACTCGACCGCGTCCTCGGCGGCGGCCTGGTGGACGGCTCTGTCGTGCTCATCGGCGGCGACCCCGGCATCGGCAAGTC
GACCATCCTCCTGCAGACCCTGTGCAGCATCGCCAACCGCATGCCGGCGCTCTACGTCACCGGCGAAGAGTCGCAGCAGC
AGGTGGCCATGCGCGCGCGGCGCCTGGGCCTGCCGGAAGACAAGCTCAAGGTCATGACCGAGACCTGCATCGAGAGCATC
ATCGCCACTGCTCGCCACGAGCAGCCCAAGGTGATGGTGATCGACTCCATCCAGACCATCTTCACCGAACAGCTGCAATC
GGCCCCCGGCGGCGTCGCCCAGGTGCGCGAGAGCGCCGCGTTGCTGGTGCGCTTCGCCAAGCAGAGCGGCACGGCGATCT
TCCTGGTCGGCCACGTCACCAAGGAAGGCGCCCTGGCCGGCCCGCGGGTGCTGGAGCACATGGTCGACACCGTGCTGTAT
TTCGAGGGCGAGTCCGACGGCCGCCTGCGCCTGCTGCGGGCGGTGAAGAACCGCTTCGGCGCGGTCAACGAACTGGGCGT
GTTCGCCATGACCGACCGTGGCCTGAAGGAGGTCTCCAACCCTTCGGCGATCTTCCTCACCCGCGCCCAGGAATCGGTGC
CCGGCAGCGTGGTCATGGCCACCTGGGAAGGCTCGCGGCCGATGCTGGTGGAGGTGCAGGCGCTGGTCGACACCAGCCAC
CTGGCCAACCCGCGGCGCGTCACCCTGGGCCTGGACCAGAACCGCCTGGCCATGCTGCTGGCGGTGCTGCACCGCCACGG
CGGCATTCCCACCTACGACCAGGACGTGTTCCTCAACGTGGTGGGCGGGGTGAAGGTGCTGGAAACCGCGTCGGACCTGG
CGCTGATGGCGGCGGTGATGTCCAGCCTGCGCAACCGGCCGCTGGATCATCAACTGCTGGTGTTCGGCGAGGTCGGCCTG
TCCGGCGAGGTGCGCCCGGTGCCCAGCGGCCAGGAACGCCTGAAGGAAGCCGCCAAGCACGGCTTCAAGCGCGCCATCGT
ACCCCAGGGCAACGCCCCCAAGGAAGCCCCGCCGGGGCTGCAGGTGATCCCGGTGACGCGCCTGGAGCAGGCGCTGGATG
CGTTGTTCGAATAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(77-223)

Subunit ChlI of Mg-chelatase (ChlI)

(365-431)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1A5D892

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.458

99.344

0.481
  radA Streptococcus pneumoniae Rx1

45.987

100

0.464
  radA Streptococcus pneumoniae R6

45.987

100

0.464
  radA Streptococcus pneumoniae TIGR4

45.987

100

0.464
  radA Streptococcus pneumoniae D39

45.987

100

0.464
  radA Streptococcus mitis SK321

46.171

100

0.462
  radA Streptococcus mitis NCTC 12261

45.952

100

0.46