Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   IG196_RS26350 Genome accession   NZ_CP062121
Coordinates   5687970..5688368 (-) Length   132 a.a.
NCBI ID   WP_099792921.1    Uniprot ID   A0A2G6WX73
Organism   Variovorax sp. 38R     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 5682970..5693368
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IG196_RS26335 (IG196_26335) - 5684676..5687009 (-) 2334 WP_192193667.1 methyl-accepting chemotaxis protein -
  IG196_RS26340 (IG196_26340) - 5687052..5687585 (-) 534 WP_101490349.1 chemotaxis protein CheW -
  IG196_RS26345 (IG196_26345) - 5687605..5687970 (-) 366 WP_099792919.1 response regulator -
  IG196_RS26350 (IG196_26350) pilG 5687970..5688368 (-) 399 WP_099792921.1 response regulator Regulator
  IG196_RS26355 (IG196_26355) - 5688452..5688622 (-) 171 WP_099792923.1 rubredoxin -
  IG196_RS26360 (IG196_26360) thiD 5688734..5689702 (+) 969 WP_192193668.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  IG196_RS26365 (IG196_26365) hemL 5689702..5690982 (+) 1281 WP_192193669.1 glutamate-1-semialdehyde 2,1-aminomutase -
  IG196_RS26370 (IG196_26370) - 5690999..5692399 (-) 1401 WP_192193670.1 amidase family protein -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14736.90 Da        Isoelectric Point: 7.3215

>NTDB_id=486144 IG196_RS26350 WP_099792921.1 5687970..5688368(-) (pilG) [Variovorax sp. 38R]
MSPNGSGYKVLVIDDSNTIRRSAEIFLKQGGHEVLLAEDGFDALSKVNDHKPHLIFCDILMPRLDGYQTCAIIKRNAHFS
NVPVVMLSSKDGVFDKARGRMVGSQDYLTKPFTKDQLLQAVQQFGIVQQEVQ

Nucleotide


Download         Length: 399 bp        

>NTDB_id=486144 IG196_RS26350 WP_099792921.1 5687970..5688368(-) (pilG) [Variovorax sp. 38R]
ATGAGCCCGAATGGATCTGGTTACAAGGTGCTGGTCATCGACGACAGCAACACCATCCGGCGCAGTGCCGAGATTTTTTT
GAAGCAGGGTGGGCACGAGGTTCTTCTCGCGGAAGACGGCTTCGACGCGCTCTCCAAGGTTAACGACCACAAGCCTCACC
TGATTTTCTGCGACATCCTGATGCCTCGTCTCGACGGCTATCAGACCTGCGCCATCATCAAGCGCAACGCGCATTTCTCC
AATGTCCCGGTCGTCATGCTGTCTTCGAAAGACGGCGTATTCGACAAGGCCCGCGGCCGCATGGTCGGGTCCCAGGACTA
TCTCACCAAGCCGTTCACCAAAGACCAGCTGCTGCAGGCCGTGCAGCAGTTTGGCATTGTTCAACAGGAAGTGCAGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2G6WX73

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

62.281

86.364

0.538