Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   TL13_RS01315 Genome accession   NC_021213
Coordinates   248045..248758 (+) Length   237 a.a.
NCBI ID   WP_012774930.1    Uniprot ID   A0A0H3MT72
Organism   Streptococcus suis TL13     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 243045..253758
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TL13_RS01305 (TL13_0259) treC 244112..245737 (-) 1626 WP_015646355.1 alpha,alpha-phosphotrehalase -
  TL13_RS01310 (TL13_0260) treP 245818..247812 (-) 1995 WP_015646356.1 PTS system trehalose-specific EIIBC component -
  TL13_RS01315 (TL13_0261) treR 248045..248758 (+) 714 WP_012774930.1 trehalose operon repressor Regulator
  TL13_RS01320 (TL13_0262) - 248816..249127 (+) 312 WP_002935948.1 hypothetical protein -
  TL13_RS01325 (TL13_0263) - 249124..249672 (+) 549 WP_015646357.1 CvpA family protein -
  TL13_RS01330 (TL13_0265) mutS/mutS2 250223..252556 (+) 2334 WP_015646359.1 endonuclease MutS2 Machinery gene
  TL13_RS01335 - 252580..253292 (+) 713 Protein_232 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27200.07 Da        Isoelectric Point: 6.7422

>NTDB_id=48614 TL13_RS01315 WP_012774930.1 248045..248758(+) (treR) [Streptococcus suis TL13]
MKKYQEIYNDLKEKIRTNVYPAESSLPTEQQLQEIYGVSRDTVRKALAILTEGGLIQKVQGRGSMVLKQEILNFPVSGLT
SYQELTNVLQLSTKTDVVSLDMITVNSSLSHLTGFEPYSKVWKVVRTRSIDGKVSVVDTDYLAVDVVPELTTAIAEKSIY
EYLENKLGLDIAYAQKEITVEPTNREERELMQSKDDYLVLIKSRVYLGDTQQFQYTESKHKIDKFRFVDFARRKHSL

Nucleotide


Download         Length: 714 bp        

>NTDB_id=48614 TL13_RS01315 WP_012774930.1 248045..248758(+) (treR) [Streptococcus suis TL13]
ATGAAAAAATACCAAGAAATTTATAATGACTTAAAAGAAAAAATACGGACAAATGTTTATCCGGCAGAAAGCTCCCTACC
GACAGAACAACAGCTTCAGGAAATCTATGGTGTTAGTCGTGATACGGTTCGTAAGGCGTTGGCGATTTTGACTGAGGGAG
GTTTGATTCAAAAAGTGCAAGGGCGTGGTTCAATGGTCCTTAAGCAAGAAATTCTCAATTTCCCAGTTTCAGGTTTAACT
TCCTATCAGGAATTGACAAATGTTCTCCAGCTTTCTACCAAGACAGATGTTGTCAGCTTAGATATGATTACCGTTAATAG
TAGCCTTTCGCACTTGACAGGCTTTGAGCCGTATAGCAAGGTGTGGAAAGTTGTCCGTACACGTTCGATTGACGGTAAGG
TCTCCGTTGTGGATACAGATTATCTTGCTGTCGATGTCGTGCCAGAGTTGACAACTGCTATTGCTGAAAAATCCATATAC
GAATACCTAGAAAATAAGTTAGGCCTTGATATTGCTTATGCACAAAAAGAGATTACGGTAGAGCCGACCAATCGAGAAGA
GCGTGAGCTAATGCAATCGAAGGATGATTATTTGGTCTTGATTAAATCTCGTGTCTATCTCGGTGATACCCAACAATTCC
AATATACAGAAAGCAAGCATAAAATTGATAAATTCCGCTTTGTAGATTTTGCTCGTAGAAAGCATTCTTTATAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-66)

UTRA domain (UTRA)

(91-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3MT72

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

52.137

98.734

0.515