Detailed information    

insolico Bioinformatically predicted

Overview

Name   degQ   Type   Regulator
Locus tag   IGB10_RS14620 Genome accession   NZ_CP062074
Coordinates   2998045..2998185 (-) Length   46 a.a.
NCBI ID   WP_003152043.1    Uniprot ID   A3KLB4
Organism   Bacillus velezensis strain BSC16a     
Function   modification of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 2993045..3003185
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IGB10_RS14595 (IGB10_14595) - 2993391..2993774 (-) 384 WP_007613430.1 hotdog fold thioesterase -
  IGB10_RS14600 (IGB10_14600) comA 2993796..2994440 (-) 645 WP_003152052.1 response regulator transcription factor Regulator
  IGB10_RS14605 (IGB10_14605) comP 2994521..2996821 (-) 2301 WP_032876801.1 histidine kinase Regulator
  IGB10_RS14610 (IGB10_14610) comX 2996835..2997008 (-) 174 WP_012118314.1 competence pheromone ComX -
  IGB10_RS14615 (IGB10_14615) - 2996977..2997837 (-) 861 WP_142925231.1 polyprenyl synthetase family protein -
  IGB10_RS14620 (IGB10_14620) degQ 2998045..2998185 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  IGB10_RS14630 (IGB10_14630) - 2998651..2998992 (+) 342 WP_032876795.1 hypothetical protein -
  IGB10_RS14635 (IGB10_14635) - 2998999..3000222 (-) 1224 WP_032876792.1 EAL and HDOD domain-containing protein -
  IGB10_RS14640 (IGB10_14640) - 3000352..3001818 (-) 1467 WP_014418767.1 nicotinate phosphoribosyltransferase -
  IGB10_RS14645 (IGB10_14645) - 3001836..3002387 (-) 552 WP_003152033.1 cysteine hydrolase family protein -
  IGB10_RS14650 (IGB10_14650) - 3002484..3002882 (-) 399 WP_003152031.1 YueI family protein -

Sequence

Protein


Download         Length: 46 a.a.        Molecular weight: 5518.30 Da        Isoelectric Point: 4.9432

>NTDB_id=486113 IGB10_RS14620 WP_003152043.1 2998045..2998185(-) (degQ) [Bacillus velezensis strain BSC16a]
MENKLEEVKQLLFRLENDIRETTDSLRNINKSIDQLDKFSYAMKIS

Nucleotide


Download         Length: 141 bp        

>NTDB_id=486113 IGB10_RS14620 WP_003152043.1 2998045..2998185(-) (degQ) [Bacillus velezensis strain BSC16a]
GTGGAAAACAAATTAGAAGAAGTAAAGCAATTATTATTCCGACTTGAAAATGATATCAGAGAAACAACCGACTCATTACG
AAACATTAACAAAAGCATTGATCAGCTCGATAAATTCTCATATGCAATGAAAATTTCTTAA

Domains

Predicted by InterproScan.

DegQ (SacQ) family (DegQ)

(1-46)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLB4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degQ Bacillus subtilis subsp. subtilis str. 168

89.13

100

0.891