Detailed information NTG0486065

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: KBW66_RS23945
• Genome accession: NZ_CP072980
• Coordinates: 4886446..4887438 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain 2547
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 4881446..4892438

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KBW66_RS23925 (KBW66_23925)	ygbM	4882084..4882860 (+)	777	WP_001136914.1	HPr family phosphocarrier protein	-
KBW66_RS23930 (KBW66_23930)	ygbN	4882949..4884313 (+)	1365	WP_000104433.1	GntP family transporter	-
KBW66_RS23935 (KBW66_23935)	-	4884456..4885499 (-)	1044	WP_001161583.1	MBL fold metallo-hydrolase	-
KBW66_RS23940 (KBW66_23940)	-	4885724..4886275 (+)	552	WP_001179444.1	flavodoxin family protein	-
KBW66_RS23945 (KBW66_23945)	rpoS	4886446..4887438 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
KBW66_RS23950 (KBW66_23950)	nlpD	4887501..4888595 (-)	1095	WP_306278776.1	murein hydrolase activator NlpD	-
KBW66_RS23955 (KBW66_23955)	pcm	4888780..4889406 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
KBW66_RS23960 (KBW66_23960)	surE	4889400..4890161 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
KBW66_RS23965 (KBW66_23965)	truD	4890142..4891191 (-)	1050	WP_000568920.1	tRNA pseudouridine(13) synthase TruD	-
KBW66_RS23970 (KBW66_23970)	ispF	4891188..4891667 (-)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
KBW66_RS23975 (KBW66_23975)	ispD	4891667..4892377 (-)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=486065 KBW66_RS23945 WP_000081550.1 4886446..4887438(-) (rpoS) [Escherichia coli strain 2547]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=486065 KBW66_RS23945 WP_000081550.1 4886446..4887438(-) (rpoS) [Escherichia coli strain 2547]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCATTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715