Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   IGB11_RS03550 Genome accession   NZ_CP062071
Coordinates   685633..687300 (+) Length   555 a.a.
NCBI ID   WP_095758815.1    Uniprot ID   -
Organism   Ligilactobacillus salivarius strain ZLp4b     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 680633..692300
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IGB11_RS03520 (IGB11_03530) folD 681015..681872 (+) 858 WP_003705927.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD -
  IGB11_RS03525 (IGB11_03535) xseA 681865..683205 (+) 1341 WP_086201298.1 exodeoxyribonuclease VII large subunit -
  IGB11_RS03530 (IGB11_03540) - 683205..683432 (+) 228 WP_003699848.1 exodeoxyribonuclease VII small subunit -
  IGB11_RS03535 (IGB11_03545) - 683398..684315 (+) 918 WP_003699850.1 polyprenyl synthetase family protein -
  IGB11_RS03540 (IGB11_03550) - 684318..685145 (+) 828 WP_003704070.1 TlyA family rRNA (cytidine-2'-O)-methyltransferase -
  IGB11_RS03545 (IGB11_03555) - 685170..685628 (+) 459 WP_003699854.1 arginine repressor -
  IGB11_RS03550 (IGB11_03560) recN 685633..687300 (+) 1668 WP_095758815.1 DNA repair protein RecN Machinery gene
  IGB11_RS03555 (IGB11_03565) lexA 687364..687984 (-) 621 WP_003699857.1 transcriptional repressor LexA -
  IGB11_RS03560 (IGB11_03570) - 688131..688385 (+) 255 WP_003704077.1 DUF896 domain-containing protein -
  IGB11_RS03565 (IGB11_03575) - 688512..688736 (+) 225 WP_086201297.1 YneF family protein -
  IGB11_RS03570 (IGB11_03580) yihA 688819..689409 (+) 591 WP_003699861.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  IGB11_RS03575 (IGB11_03585) - 689427..689726 (+) 300 WP_003699862.1 nucleoside triphosphate pyrophosphohydrolase family protein -
  IGB11_RS03580 (IGB11_03590) - 689745..691643 (+) 1899 WP_225360808.1 DUF2207 domain-containing protein -

Sequence

Protein


Download         Length: 555 a.a.        Molecular weight: 63192.98 Da        Isoelectric Point: 4.9239

>NTDB_id=486035 IGB11_RS03550 WP_095758815.1 685633..687300(+) (recN) [Ligilactobacillus salivarius strain ZLp4b]
MLQELSIKDFAIIDEIQISFQPKMTVLTGETGAGKSIIIDALGLLAGGRGSTEFIRKGEKKAVIQGLFTLPRKANTYNIL
EEYGIDSEDGQIILQRDLYRGGRNICRINGMMVNLATLRKVGETLIDIHGQNEHQELMKPENHIDLLDEYDKKTSQLRNQ
YQVVYQNYRKLKLSMEKKEADEKAWAQRLDMLNFQVKEIEEAGLKINEEDELVEEKNKLDNFQAIHDALELSYQILSGEK
IDVVGNLGNAMNELSDVSDLSENLQEINTKISDAFYSLEDAARDISDELDSMEWNGERLNEIEERLELIHQLKRKYGDTI
EDILHYHSRIEKELREMENAEQNSEKQERQLSEALEKVKELAIKLSKQRKKSAKKLEKMIHEQLSALYMDKAVFEVKCLN
NSKLYSKGIDKVEFYIQTNPGEEMGPLAKIASGGELSRIMLALKTIFSQKMGVTSIIFDEVDTGVSGRVAQAIAEKISQI
SNNSQVLCITHLPQVAAIADNHYYISKSVNDGRTETSLKELDEKQKIREIARMLSGSEITELTLKHAEELIKMSK

Nucleotide


Download         Length: 1668 bp        

>NTDB_id=486035 IGB11_RS03550 WP_095758815.1 685633..687300(+) (recN) [Ligilactobacillus salivarius strain ZLp4b]
ATGTTACAAGAATTATCAATAAAGGATTTCGCCATTATAGATGAAATACAAATATCATTTCAACCTAAGATGACAGTATT
GACGGGTGAGACAGGTGCTGGTAAATCAATTATTATTGATGCTCTGGGCTTATTAGCAGGAGGCAGAGGTTCTACTGAAT
TTATTCGTAAGGGTGAGAAAAAAGCTGTTATTCAGGGGTTATTTACATTACCTAGAAAAGCTAATACTTACAACATTTTG
GAAGAATACGGAATAGATTCTGAAGATGGACAAATAATCTTGCAAAGAGATTTATATCGAGGCGGAAGAAATATTTGTCG
CATCAATGGAATGATGGTAAATTTGGCAACTTTACGAAAGGTAGGAGAAACATTAATTGATATTCATGGGCAGAATGAGC
ACCAAGAATTGATGAAGCCAGAAAACCATATAGATTTGTTAGATGAATATGATAAAAAAACATCCCAGTTAAGAAATCAA
TATCAAGTTGTGTATCAAAATTATCGTAAGCTAAAATTATCAATGGAAAAAAAAGAAGCTGATGAGAAGGCCTGGGCCCA
AAGACTAGATATGCTAAATTTCCAAGTCAAAGAAATTGAAGAAGCTGGTTTAAAAATTAATGAAGAAGATGAACTAGTCG
AAGAAAAAAATAAATTGGATAATTTTCAAGCAATACATGATGCTTTAGAATTAAGTTATCAAATTTTATCTGGTGAAAAA
ATAGATGTAGTTGGAAATTTAGGAAATGCAATGAATGAGTTAAGCGATGTTTCAGATTTATCAGAAAATCTTCAAGAAAT
CAATACTAAAATTTCAGATGCTTTTTATAGTCTAGAAGATGCCGCTCGTGATATTTCAGATGAACTTGATTCAATGGAGT
GGAATGGAGAAAGGTTAAATGAAATAGAGGAAAGATTAGAGTTGATCCACCAATTGAAGAGAAAATATGGTGATACAATA
GAGGATATTTTGCATTATCATAGTAGAATTGAAAAAGAATTAAGAGAAATGGAAAATGCGGAACAAAATTCAGAAAAGCA
AGAAAGACAATTATCTGAGGCATTAGAAAAAGTAAAAGAATTGGCAATAAAACTTTCGAAACAGCGGAAGAAAAGCGCTA
AAAAATTAGAAAAAATGATCCATGAACAATTAAGTGCATTATATATGGACAAAGCTGTATTTGAAGTTAAATGTTTAAAT
AATTCTAAATTGTATTCTAAAGGTATCGATAAAGTTGAATTTTATATTCAAACTAATCCAGGTGAAGAAATGGGCCCATT
AGCTAAGATAGCTTCAGGTGGTGAACTTTCACGAATAATGTTAGCTTTAAAAACAATTTTTTCTCAAAAGATGGGTGTCA
CAAGTATTATCTTTGATGAAGTTGATACTGGTGTTAGCGGTCGTGTAGCTCAAGCGATTGCTGAAAAAATAAGCCAAATT
TCAAATAATTCACAAGTTTTATGTATTACTCACTTGCCGCAAGTTGCAGCAATTGCAGACAATCATTACTATATTTCAAA
ATCTGTCAACGATGGTAGAACAGAAACTTCATTAAAAGAATTAGATGAAAAACAAAAAATTAGAGAGATAGCAAGAATGT
TATCTGGATCTGAAATTACAGAATTAACATTGAAACATGCAGAAGAATTAATTAAAATGTCAAAATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

48.427

100

0.499