Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   JAB4_RS20895 Genome accession   NZ_CP062062
Coordinates   4585730..4587106 (-) Length   458 a.a.
NCBI ID   WP_046683923.1    Uniprot ID   A0A7M2NMH8
Organism   Janthinobacterium sp. HH102     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4580730..4592106
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JAB4_RS20870 (JAB4_041160) rraA 4580896..4581390 (-) 495 WP_070223974.1 ribonuclease E activity regulator RraA -
  JAB4_RS20875 (JAB4_041170) - 4581423..4582658 (-) 1236 WP_070223976.1 MFS transporter -
  JAB4_RS20880 (JAB4_041180) - 4582759..4583559 (+) 801 WP_070223978.1 helix-turn-helix transcriptional regulator -
  JAB4_RS20885 (JAB4_041190) fliD 4583664..4585049 (-) 1386 WP_070223979.1 flagellar filament capping protein FliD -
  JAB4_RS20890 (JAB4_041200) - 4585278..4585598 (-) 321 WP_071650264.1 PilZ domain-containing protein -
  JAB4_RS20895 (JAB4_041210) radA 4585730..4587106 (-) 1377 WP_046683923.1 DNA repair protein RadA Machinery gene
  JAB4_RS20900 (JAB4_041220) alr 4587180..4588271 (-) 1092 WP_070223984.1 alanine racemase -
  JAB4_RS20905 (JAB4_041230) lplT 4588531..4589793 (+) 1263 WP_070223986.1 lysophospholipid transporter LplT -
  JAB4_RS20910 (JAB4_041240) - 4589830..4590756 (-) 927 WP_070223988.1 DUF1853 family protein -
  JAB4_RS20915 (JAB4_041250) - 4590749..4591651 (-) 903 WP_070223990.1 uracil-DNA glycosylase -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 49062.65 Da        Isoelectric Point: 7.2144

>NTDB_id=485982 JAB4_RS20895 WP_046683923.1 4585730..4587106(-) (radA) [Janthinobacterium sp. HH102]
MAKVKTIYTCSDCGAISNKWMGQCTSCNQWNTMVETLPETGGNNRYSNPQHMSLAQTAPVLSLDDIDAIDVPRFGTGIEE
FDRVLGGGMVAGGVVLIGGDPGIGKSTLLLQALANMSHHKRVLYVSGEESGAQIALRAKRLVIDAKELKLQAEIQLEKIL
STLNDLKPEVVVIDSIQTVYSDALSSAPGSVAQVRECAAQLTRAAKQTGVTIILVGHVTKEGALAGPRVLEHIVDTVLYF
EGDAHSSFRLVRAIKNRFGAVNELGVFAMTEKGLKGVSNPSALFLSQHDNQVPGSCVMVTQEGTRPLLVEIQALVDTSHL
PNARRLSVGLEQNRLAMLLAVAHRHAGIAAFDQDVFINAVGGVKITEPAADLAVLLAINSSMRNKPLPRGLVVFGEVGLA
GEIRPAPRGQERLREAAKLGFTLAVVPKSNLPKQVIEGLKVIGVERIDEAFNKLRDLE

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=485982 JAB4_RS20895 WP_046683923.1 4585730..4587106(-) (radA) [Janthinobacterium sp. HH102]
ATGGCAAAAGTCAAGACCATCTACACCTGCAGCGATTGCGGCGCCATCAGCAACAAATGGATGGGGCAATGCACCTCGTG
CAACCAGTGGAATACCATGGTGGAAACCCTGCCCGAGACGGGCGGCAACAACCGCTATTCGAATCCGCAGCACATGTCGC
TGGCGCAGACGGCGCCCGTGCTGTCGCTCGACGATATCGACGCCATCGACGTGCCCCGCTTCGGCACGGGCATCGAGGAA
TTCGACCGCGTGCTGGGCGGCGGCATGGTGGCGGGCGGCGTGGTGCTGATCGGCGGCGACCCCGGCATCGGCAAGTCGAC
CCTGCTGCTGCAGGCGCTGGCGAACATGTCGCACCACAAGCGCGTGCTGTACGTCAGCGGCGAAGAATCGGGCGCGCAGA
TCGCCCTGCGCGCCAAGCGCCTCGTCATCGACGCCAAGGAACTCAAATTGCAGGCGGAGATCCAGCTGGAAAAGATCCTC
TCCACCTTGAACGACCTGAAGCCGGAAGTGGTGGTCATCGACTCGATCCAGACCGTGTATTCGGACGCCCTCAGCTCGGC
GCCCGGTTCCGTGGCGCAAGTGCGCGAATGCGCGGCGCAGCTGACGCGGGCGGCCAAGCAGACGGGCGTGACGATCATTC
TGGTCGGCCACGTGACGAAAGAGGGCGCGCTGGCCGGCCCCCGCGTGCTCGAGCATATCGTCGACACGGTGCTGTATTTC
GAGGGCGACGCCCACTCCAGTTTCCGCCTCGTGCGCGCCATCAAGAACCGTTTCGGCGCCGTCAATGAGCTGGGGGTGTT
CGCCATGACGGAAAAGGGCTTGAAAGGGGTGTCGAACCCGTCCGCGCTGTTCCTGTCGCAGCACGACAACCAGGTGCCTG
GCTCGTGCGTGATGGTGACGCAGGAAGGCACGCGCCCCTTGCTGGTGGAAATCCAGGCCCTCGTCGACACGAGTCACTTG
CCGAATGCGCGCCGGCTGTCCGTCGGCCTGGAACAGAACCGCCTGGCCATGCTGCTGGCCGTGGCGCACCGCCATGCGGG
CATCGCCGCCTTCGACCAGGATGTGTTCATCAACGCCGTCGGCGGCGTCAAGATCACGGAACCGGCGGCCGACCTGGCCG
TATTGTTGGCGATTAACTCGTCGATGCGCAACAAGCCCCTGCCGCGGGGGCTCGTGGTGTTTGGCGAAGTGGGGCTGGCC
GGCGAAATCCGCCCCGCGCCGCGGGGCCAGGAACGCTTGCGCGAAGCGGCCAAGCTGGGCTTTACCCTGGCCGTGGTGCC
CAAGTCCAACCTGCCGAAGCAAGTCATCGAAGGCCTCAAGGTCATCGGCGTCGAGCGCATTGACGAAGCGTTCAATAAAT
TGCGCGACCTGGAGTAA

Domains

Predicted by InterproScan.

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(361-452)

AAA domain (AAA_25)

(78-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7M2NMH8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.584

100

0.487
  radA Streptococcus mitis NCTC 12261

47.609

100

0.478
  radA Streptococcus pneumoniae Rx1

47.609

100

0.478
  radA Streptococcus pneumoniae D39

47.609

100

0.478
  radA Streptococcus pneumoniae R6

47.609

100

0.478
  radA Streptococcus pneumoniae TIGR4

47.609

100

0.478
  radA Streptococcus mitis SK321

47.391

100

0.476