Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   JAB4_RS03915 Genome accession   NZ_CP062062
Coordinates   861715..863193 (+) Length   492 a.a.
NCBI ID   WP_070221651.1    Uniprot ID   A0A853SV47
Organism   Janthinobacterium sp. HH102     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 856715..868193
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JAB4_RS03890 (JAB4_007610) - 858151..859161 (+) 1011 WP_083287308.1 KpsF/GutQ family sugar-phosphate isomerase -
  JAB4_RS03895 (JAB4_007620) - 859161..859694 (+) 534 WP_070221654.1 HAD hydrolase family protein -
  JAB4_RS03900 (JAB4_007630) lptC 859737..860348 (+) 612 WP_070221653.1 LPS export ABC transporter periplasmic protein LptC -
  JAB4_RS03905 (JAB4_007640) lptA 860374..860955 (+) 582 WP_070221652.1 lipopolysaccharide transport periplasmic protein LptA -
  JAB4_RS03910 (JAB4_007650) lptB 860955..861710 (+) 756 WP_034753325.1 LPS export ABC transporter ATP-binding protein -
  JAB4_RS03915 (JAB4_007660) rpoN/rpoN1 861715..863193 (+) 1479 WP_070221651.1 RNA polymerase factor sigma-54 Machinery gene
  JAB4_RS03920 (JAB4_007670) raiA 863263..863622 (+) 360 WP_070221650.1 ribosome-associated translation inhibitor RaiA -
  JAB4_RS03925 - 863754..864839 (+) 1086 WP_070221649.1 enoyl-CoA hydratase/isomerase family protein -
  JAB4_RS03930 (JAB4_007690) rapZ 864840..865703 (-) 864 WP_070221648.1 RNase adapter RapZ -
  JAB4_RS03935 (JAB4_007700) hprK 865870..866805 (-) 936 WP_034753337.1 HPr(Ser) kinase/phosphatase -
  JAB4_RS03940 (JAB4_007710) - 866842..867324 (-) 483 WP_034753339.1 PTS sugar transporter subunit IIA -

Sequence

Protein


Download         Length: 492 a.a.        Molecular weight: 54537.23 Da        Isoelectric Point: 5.1075

>NTDB_id=485974 JAB4_RS03915 WP_070221651.1 861715..863193(+) (rpoN/rpoN1) [Janthinobacterium sp. HH102]
MKQSLQLRTSQHLALTPQLQQSIRLLQLSTLELHQELEQLLTDNPLLERLDDPLDRSLRLLSDGALSSTAAPAEAPPQPP
GQEAPAAPAEAETFDGEAGEGPAAADGGDSDWSEASRGKAPDDEDSRPQLEAHHCTLREHLMEQMRVTVLELRDRALVEL
IIDALDDNGYLEESLDDILARLPEELEIDADEMRTALSLLQSFDPPGVGARNASECLALQIKRLPHIAMVTRRMALVIVE
KHLAWFAQRDFNKLKKALDCDDEDLREAQTVIRQCNPHPGAVFAADVSDYVVPDVVVKRARNGWQVTLNNDVMPRLRVNA
MYANLLKQGKGEGAMGAQLQEAKWLIKNMRQRFDTILRVAQAIVERQKNFFSHGAVAMRPLVLREIADTLGLHESTISRV
TTQKYMLTPHGMFELKYFFGSHVATEAGGEASSTAIRALIVQLTGAEDPKNPLSDSKIADMLGEQGMVIARRTVAKYREA
LKIPPVSLRKCL

Nucleotide


Download         Length: 1479 bp        

>NTDB_id=485974 JAB4_RS03915 WP_070221651.1 861715..863193(+) (rpoN/rpoN1) [Janthinobacterium sp. HH102]
ATGAAACAATCATTGCAGCTGCGCACTTCGCAGCACCTGGCACTGACGCCGCAGTTGCAGCAATCGATACGCCTGTTGCA
ATTGTCTACTCTGGAATTGCATCAGGAACTCGAGCAACTGCTGACGGACAATCCCTTGCTCGAGCGCCTCGACGATCCGC
TCGACCGTTCGCTGCGCCTGCTGTCCGACGGGGCTTTGAGCTCCACGGCCGCGCCGGCCGAAGCGCCGCCCCAGCCGCCA
GGCCAGGAGGCGCCCGCGGCGCCGGCCGAAGCGGAAACCTTTGACGGCGAGGCGGGCGAGGGCCCGGCCGCCGCGGATGG
CGGCGACAGCGACTGGAGCGAAGCGAGCCGGGGCAAGGCGCCCGACGACGAAGATTCCCGCCCGCAACTGGAGGCCCATC
ACTGCACCCTGCGCGAACACCTGATGGAGCAGATGCGCGTGACGGTGCTCGAATTGCGCGACCGCGCGCTGGTCGAGCTG
ATCATCGACGCGCTCGACGACAATGGCTACCTGGAAGAGTCGCTCGACGACATCCTGGCGCGTCTGCCGGAAGAGCTGGA
AATCGATGCCGACGAGATGCGCACGGCCTTGTCGCTGCTGCAAAGTTTCGATCCGCCCGGCGTGGGCGCGCGCAATGCGT
CCGAATGCCTGGCGCTGCAAATCAAGCGCTTGCCGCACATTGCCATGGTGACGCGGCGCATGGCCCTCGTCATCGTGGAA
AAGCACCTGGCCTGGTTTGCCCAGCGCGATTTCAACAAGCTGAAAAAAGCCCTCGATTGCGACGATGAAGACTTGCGTGA
AGCGCAGACGGTAATTCGCCAGTGCAACCCGCATCCGGGCGCCGTGTTCGCTGCGGACGTGTCCGATTACGTGGTGCCCG
ACGTCGTCGTCAAGCGCGCGCGCAATGGCTGGCAAGTGACCCTGAACAACGACGTCATGCCGCGCCTGCGCGTCAATGCC
ATGTACGCCAACTTGCTCAAGCAGGGCAAGGGCGAGGGCGCCATGGGTGCACAGTTGCAGGAAGCCAAGTGGCTGATCAA
GAATATGCGCCAGCGCTTCGACACGATTCTGCGCGTGGCGCAGGCGATAGTAGAAAGACAAAAGAACTTTTTCTCGCATG
GGGCCGTTGCCATGCGCCCCCTTGTGCTCCGTGAAATAGCTGATACACTGGGTTTACACGAGAGTACTATCTCGCGGGTA
ACAACTCAAAAGTACATGCTGACCCCGCACGGCATGTTCGAGTTGAAATATTTCTTTGGTAGCCACGTCGCCACCGAAGC
GGGGGGCGAAGCGTCATCGACGGCGATACGGGCATTGATCGTGCAACTGACAGGAGCAGAAGACCCTAAAAATCCTTTAT
CCGACAGTAAGATTGCGGACATGCTGGGGGAACAAGGCATGGTGATTGCGCGACGTACTGTTGCCAAATACCGGGAAGCA
TTAAAAATTCCGCCAGTGAGCCTGCGTAAGTGTTTGTAA

Domains

Predicted by InterproScan.

Sigma-54 factor, core binding domain (Sigma54_CBD)

(131-322)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-48)

Sigma-54, DNA binding domain (Sigma54_DBD)

(337-490)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A853SV47

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

60.714

100

0.622