Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   IGB08_RS05105 Genome accession   NZ_CP062059
Coordinates   1069796..1071175 (-) Length   459 a.a.
NCBI ID   WP_003643928.1    Uniprot ID   -
Organism   Lactiplantibacillus plantarum strain PMO08     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1064796..1076175
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IGB08_RS05090 (IGB08_05090) cysS 1065099..1066511 (-) 1413 WP_024971787.1 cysteine--tRNA ligase -
  IGB08_RS05095 (IGB08_05095) gltX 1066789..1068279 (-) 1491 WP_003640932.1 glutamate--tRNA ligase -
  IGB08_RS05100 (IGB08_05100) - 1068605..1069780 (-) 1176 WP_176791865.1 PIN/TRAM domain-containing protein -
  IGB08_RS05105 (IGB08_05105) radA 1069796..1071175 (-) 1380 WP_003643928.1 DNA repair protein RadA Machinery gene
  IGB08_RS05110 (IGB08_05110) - 1072054..1072590 (-) 537 WP_003640928.1 dUTP diphosphatase -
  IGB08_RS05115 (IGB08_05115) - 1072729..1073025 (+) 297 WP_003640927.1 GNAT family N-acetyltransferase -
  IGB08_RS05120 (IGB08_05120) rpiA 1073034..1073717 (+) 684 WP_003640926.1 ribose-5-phosphate isomerase RpiA -
  IGB08_RS05125 (IGB08_05125) - 1073793..1075124 (+) 1332 WP_003643927.1 aminopeptidase C -
  IGB08_RS05130 (IGB08_05130) - 1075314..1076006 (-) 693 WP_003640924.1 matrixin family metalloprotease -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 50019.32 Da        Isoelectric Point: 7.7217

>NTDB_id=485953 IGB08_RS05105 WP_003643928.1 1069796..1071175(-) (radA) [Lactiplantibacillus plantarum strain PMO08]
MAKAKTQFVCSNCGYSTPRYLGRCPNCGEWNTLTEEHFDTKPDRKSRVSFAGKSAKPQRLKEVSLTKTPRVKTKLKEFNR
VLGGGVVPGSLVLIGGDPGIGKSTLLLQVSGQLAETGGSVLYVTGEESASQVKMRADRLAVSSEDFYLYPETDMSNIRST
IESTHPEFVVIDSVQTMQEPDMDSAIGSVSQIREITAELLQIAKTNGITIFIVGHVTKGGAIAGPKILEHMVDTVLYFEG
DLHHTYRILRAVKNRFGSTNELGIFEMRTGGLYEVANPSEIFLEERLKDATGSAIVVSMEGTRPILVEVQALVTPTVFGN
AKRTASGLDHNRVSLIMAVLEKRASLMLQNQDAYLKAAGGVKLDEPAIDLAIAVSVASSYRDQQTRPSDCFVGEVGLTGE
IRRVNRIESRVGEAAKLGFKRIFIPKNNLQGWDIPTGIEVIGVATLKEALQLALQQPNY

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=485953 IGB08_RS05105 WP_003643928.1 1069796..1071175(-) (radA) [Lactiplantibacillus plantarum strain PMO08]
GTGGCAAAAGCAAAAACTCAGTTTGTTTGTTCTAACTGTGGTTATTCAACACCGCGATATTTAGGACGGTGTCCGAACTG
TGGTGAATGGAATACACTAACTGAAGAACATTTTGATACAAAACCGGACCGCAAGTCGCGGGTGAGCTTTGCGGGTAAGT
CGGCTAAGCCACAACGACTCAAAGAAGTGTCGCTGACTAAGACACCGCGTGTCAAGACTAAGCTGAAAGAGTTCAACCGG
GTCTTAGGTGGCGGTGTTGTGCCAGGTTCACTAGTTTTGATCGGTGGTGATCCAGGTATTGGTAAGTCAACGTTACTACT
GCAAGTTTCGGGGCAATTGGCCGAGACGGGTGGTTCTGTACTATACGTGACTGGTGAAGAAAGTGCCTCCCAAGTGAAGA
TGCGGGCGGACCGGCTGGCTGTTAGCAGTGAAGACTTTTATCTTTATCCTGAGACTGATATGTCGAATATTCGTTCAACG
ATTGAATCGACGCATCCAGAATTTGTGGTCATTGATTCGGTACAAACGATGCAAGAACCTGATATGGACTCTGCGATTGG
TTCAGTATCACAAATCCGTGAAATTACGGCTGAACTACTGCAAATTGCGAAGACTAACGGCATTACCATTTTTATTGTGG
GCCATGTGACTAAGGGTGGTGCCATTGCGGGGCCTAAGATCTTAGAACATATGGTTGATACCGTTTTGTACTTTGAAGGT
GATTTACATCATACGTACCGCATTTTACGGGCAGTCAAGAATCGATTCGGGTCAACGAATGAACTGGGAATATTTGAGAT
GCGGACGGGCGGTTTGTATGAAGTGGCCAATCCGTCAGAGATCTTCTTGGAAGAACGTCTGAAGGATGCTACGGGTTCCG
CCATCGTTGTTTCAATGGAAGGCACACGACCAATCTTAGTAGAAGTTCAAGCGCTGGTAACGCCAACGGTCTTTGGTAAT
GCGAAGCGGACCGCAAGTGGCTTGGATCATAATCGAGTCTCCTTGATTATGGCAGTGTTGGAAAAACGGGCGAGTCTAAT
GCTTCAGAACCAGGACGCGTATTTGAAAGCGGCCGGTGGCGTTAAGTTAGATGAACCGGCGATTGACTTAGCTATTGCGG
TCAGTGTGGCTTCTAGTTATCGTGACCAGCAGACTCGTCCGAGTGACTGTTTTGTTGGTGAAGTCGGTTTGACTGGTGAG
ATTCGGCGGGTCAACCGGATTGAATCACGAGTTGGTGAGGCGGCTAAGCTAGGTTTTAAACGTATCTTTATTCCTAAGAA
TAATCTGCAAGGTTGGGATATCCCAACTGGAATCGAAGTAATTGGAGTTGCCACGCTAAAAGAAGCGCTCCAATTAGCAT
TACAACAACCAAATTATTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(59-220)

Subunit ChlI of Mg-chelatase (ChlI)

(362-428)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

67.849

98.257

0.667
  radA Streptococcus pneumoniae D39

67.849

98.257

0.667
  radA Streptococcus pneumoniae R6

67.849

98.257

0.667
  radA Streptococcus pneumoniae TIGR4

67.849

98.257

0.667
  radA Streptococcus mitis SK321

67.849

98.257

0.667
  radA Streptococcus mitis NCTC 12261

67.849

98.257

0.667
  radA Bacillus subtilis subsp. subtilis str. 168

65.57

99.346

0.651