Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   TL13_RS00210 Genome accession   NC_021213
Coordinates   28463..29245 (+) Length   260 a.a.
NCBI ID   WP_015646215.1    Uniprot ID   -
Organism   Streptococcus suis TL13     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 23463..34245
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TL13_RS00190 (TL13_0038) mreD 24284..24799 (+) 516 WP_015646212.1 rod shape-determining protein MreD -
  TL13_RS00195 (TL13_0039) pcsB 24884..26140 (+) 1257 WP_015646213.1 peptidoglycan hydrolase PcsB -
  TL13_RS00200 (TL13_0040) - 26243..27211 (+) 969 WP_002935337.1 ribose-phosphate diphosphokinase -
  TL13_RS00205 (TL13_0041) - 27298..28476 (+) 1179 WP_015646214.1 pyridoxal phosphate-dependent aminotransferase -
  TL13_RS00210 (TL13_0042) recO 28463..29245 (+) 783 WP_015646215.1 DNA repair protein RecO Machinery gene
  TL13_RS00215 (TL13_0043) plsX 29242..30249 (+) 1008 WP_015646216.1 phosphate acyltransferase PlsX -
  TL13_RS00220 (TL13_0044) - 30242..30490 (+) 249 WP_014637254.1 phosphopantetheine-binding protein -
  TL13_RS00225 (TL13_0045) purC 30608..31315 (+) 708 WP_015646217.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -

Sequence

Protein


Download         Length: 260 a.a.        Molecular weight: 30470.98 Da        Isoelectric Point: 5.4193

>NTDB_id=48593 TL13_RS00210 WP_015646215.1 28463..29245(+) (recO) [Streptococcus suis TL13]
MERIETRGLVLYNRNFREDDKLVKIFTEKAGKRMFFVKHASKSKLVASIQPLTYADFIVKINDDGLSYIEDFHQVQPFKN
INGDIFKLSYATYILALADAALQDKVYDPALFAFLVKTLDLMESGLDYEVLTNIFEIQLMGRFGISLNFHECAFCHRVGL
PFDYSYKYSGVLCPQHYQQDERRAYLDPNVPYLLDQFQAISFDELETISIKPEMKRKLRLFIDQLYEEYVGIHLKSKKFI
DDLSSWGQIMKPRTENEETE

Nucleotide


Download         Length: 783 bp        

>NTDB_id=48593 TL13_RS00210 WP_015646215.1 28463..29245(+) (recO) [Streptococcus suis TL13]
ATGGAACGAATTGAAACCAGGGGATTAGTCCTATATAATCGGAATTTTCGAGAAGATGACAAGCTGGTCAAGATTTTTAC
AGAGAAGGCTGGTAAGCGAATGTTTTTCGTGAAACATGCCTCTAAATCCAAGCTGGTAGCTTCTATCCAGCCTTTGACCT
ATGCGGATTTTATCGTTAAAATCAATGATGATGGTCTGTCTTATATCGAAGATTTTCATCAGGTACAGCCCTTTAAGAAT
ATTAACGGTGATATTTTCAAGCTTAGCTATGCTACCTATATCTTGGCCTTGGCCGATGCGGCCTTGCAGGACAAGGTCTA
TGACCCAGCTCTCTTTGCTTTTTTGGTCAAGACCTTGGACTTGATGGAGTCAGGTTTGGACTACGAAGTTCTGACCAATA
TCTTTGAAATTCAGCTCATGGGTCGATTTGGGATCAGTCTGAATTTTCACGAGTGTGCTTTTTGTCATCGGGTTGGCTTG
CCTTTTGACTATTCCTACAAGTACAGCGGTGTCTTGTGTCCGCAACACTATCAACAAGATGAGCGACGGGCTTATCTGGA
TCCCAATGTTCCCTATCTACTTGATCAATTTCAGGCTATTTCCTTTGATGAGCTGGAAACCATTTCCATCAAGCCTGAGA
TGAAGCGAAAATTACGGCTTTTTATTGACCAGCTGTACGAGGAATATGTGGGGATTCACTTGAAATCCAAGAAATTTATA
GATGATTTGTCTTCTTGGGGGCAGATTATGAAACCAAGAACAGAAAATGAGGAAACAGAATGA

Domains

Predicted by InterProScan.

Recombination protein O N terminal (RecO_N)

(1-78)

Recombination protein O C terminal (RecO_C)

(84-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

69.323

96.538

0.669

Multiple sequence alignment