Detailed information NTG0485871

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: KBP49_RS04630
• Genome accession: NZ_CP072933
• Coordinates: 1073570..1075006 (-)
• Length: 478 a.a.
• NCBI ID: WP_071869568.1
• Uniprot ID: -
• Organism: Xylella fastidiosa subsp. multiplex strain AlmaEM3
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1068570..1080006

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KBP49_RS04605 (KBP49_04605)	-	1069509..1069781 (+)	273	WP_004085396.1	DUF1778 domain-containing protein	-
KBP49_RS04610 (KBP49_04610)	-	1069784..1070263 (+)	480	WP_021358673.1	GNAT family N-acetyltransferase	-
KBP49_RS04615 (KBP49_04615)	-	1070599..1071792 (-)	1194	Protein_910	toprim domain-containing protein	-
KBP49_RS04620 (KBP49_04620)	-	1071758..1072756 (-)	999	WP_004085391.1	MBL fold metallo-hydrolase	-
KBP49_RS04625 (KBP49_04625)	-	1072887..1073573 (-)	687	WP_071869569.1	TIGR02453 family protein	-
KBP49_RS04630 (KBP49_04630)	sbcB	1073570..1075006 (-)	1437	WP_071869568.1	exodeoxyribonuclease I	Machinery gene
KBP49_RS04635 (KBP49_04635)	-	1075194..1076447 (+)	1254	WP_171946769.1	hypothetical protein	-
KBP49_RS04640 (KBP49_04640)	-	1077381..1079018 (+)	1638	WP_071869573.1	Na+/H+ antiporter	-
KBP49_RS04645 (KBP49_04645)	-	1079393..1079941 (+)	549	WP_004085386.1	hypothetical protein	-

Sequence

Protein

• Length: 478 a.a.
• Molecular weight: 54915.15 Da
• Isoelectric Point: 6.5860

>NTDB_id=485871 KBP49_RS04630 WP_071869568.1 1073570..1075006(-) (sbcB) [Xylella fastidiosa subsp. multiplex strain AlmaEM3]
MPPSFLFYDLETFGQDPRRTRIAQFAAVRTDTQLNVIEEPISFLVKPADDLLPSPYATLITGITPQHAQREGINEAAAFA
HIAMQMTQPHTCSLGYNTLRFDDEFIRYGLFRHFYDPYEREWRNGNSRWDLLDMLRLMHALRPEGIHWPTREDGATSFKL
EHLALANHAREGTAHEALSDVYATISMARKFRAAQPRLWNYALQLRDKRFCANLLDITSIQPVLHISQRYPATQHCAAAV
LPLTTHPHINNRIIVFDLNGDIDTLLRLSAEDIADHLYTPALDLPEGEQRIPLKEVHLNKVPALIAWNHLRASDFTRLGL
NPAMLETKAAQLRACGPDLAEKVRHVFSHTYNTANDADASLYDGFLTEEDRRLLPQLRASPADTLATFEQRLRDPRLIEL
LFRYRARNFPETLSCDEQTRWDTYRRRRLTTDTGLSELTFDQYHAQIAELRITHSQDATKQTLLDQLAAWGSELSRTL

Nucleotide

• Length: 1437 bp

>NTDB_id=485871 KBP49_RS04630 WP_071869568.1 1073570..1075006(-) (sbcB) [Xylella fastidiosa subsp. multiplex strain AlmaEM3]
ATGCCCCCCAGCTTTCTGTTCTACGACTTAGAAACTTTCGGTCAGGACCCACGTCGTACCCGCATCGCACAGTTTGCCGC
AGTACGGACGGACACCCAATTAAACGTCATCGAAGAACCAATTAGTTTCCTCGTCAAACCCGCCGATGACCTGCTCCCCT
CACCCTACGCCACACTCATCACCGGGATCACTCCGCAACACGCACAACGTGAAGGCATCAATGAAGCAGCAGCCTTCGCG
CACATTGCAATGCAGATGACACAACCACACACCTGCTCCCTCGGCTACAACACCCTACGTTTCGACGACGAATTCATCCG
CTACGGGCTATTCCGTCACTTCTACGACCCATACGAACGCGAGTGGCGCAACGGCAATTCACGGTGGGACCTGCTGGACA
TGCTGCGACTCATGCACGCACTACGCCCAGAAGGCATCCACTGGCCAACACGTGAAGACGGTGCCACCTCATTCAAACTC
GAACACCTAGCCCTTGCCAACCATGCACGCGAAGGCACAGCACACGAAGCATTATCAGATGTCTATGCCACCATCAGCAT
GGCGCGTAAATTCCGCGCCGCACAACCGCGCCTCTGGAATTACGCACTGCAACTGCGTGACAAACGCTTTTGCGCCAACC
TGCTCGACATCACCTCAATACAACCAGTACTGCATATCTCACAGCGCTATCCTGCCACACAACACTGCGCCGCCGCCGTG
CTGCCACTGACCACACACCCACACATCAACAACCGCATCATTGTTTTCGACTTGAACGGCGACATAGACACACTGCTGCG
CCTGTCTGCAGAAGACATCGCCGACCACCTGTACACCCCAGCCCTGGATTTACCCGAAGGCGAGCAACGTATCCCACTGA
AAGAAGTCCACCTAAACAAAGTACCGGCCCTGATCGCCTGGAACCACCTGCGTGCATCGGACTTCACACGCCTTGGCCTG
AACCCGGCCATGCTAGAAACCAAAGCGGCACAACTGCGCGCATGCGGACCGGATTTGGCCGAAAAAGTCCGCCACGTCTT
CAGCCATACCTACAACACCGCCAACGACGCTGATGCTTCACTGTACGACGGCTTTCTCACCGAAGAGGACCGCCGCCTCC
TGCCACAACTACGCGCCTCCCCTGCTGACACCTTGGCGACGTTCGAACAGCGCCTTCGCGATCCACGTCTCATCGAACTG
CTGTTCCGCTACCGCGCACGTAATTTTCCAGAAACCCTCTCTTGCGACGAACAGACACGCTGGGACACCTATCGGCGACG
CCGTCTGACCACCGACACCGGCCTATCAGAACTCACCTTCGACCAATACCACGCCCAAATTGCGGAATTACGGATAACGC
ACTCCCAAGATGCCACCAAACAGACCCTATTGGACCAACTCGCCGCCTGGGGCTCCGAACTATCCCGCACCCTATGA

Domains

Predicted by InterProScan.

• Exonuclease C-terminal (ExoI_SH3) (206-472)

• Exonuclease (RNase_T) (7-185)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	40.632	99.372	0.404