Detailed information NTG0485701

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: ID165_RS21990
• Genome accession: NZ_CP061947
• Coordinates: 5379382..5380755 (-)
• Length: 457 a.a.
• NCBI ID: WP_192347572.1
• Uniprot ID: -
• Organism: Algoriphagus sp. Y33
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 5374382..5385755

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ID165_RS21970	-	5374528..5375382 (+)	855	WP_192347569.1	sugar phosphate isomerase/epimerase	-
ID165_RS21975	-	5375669..5376628 (+)	960	WP_192347570.1	glycoside hydrolase family 43 protein	-
ID165_RS21980	-	5376766..5378043 (+)	1278	WP_225586867.1	Tm-1-like ATP-binding domain-containing protein	-
ID165_RS21985	-	5378218..5379078 (+)	861	WP_192347571.1	phosphoenolpyruvate hydrolase family protein	-
ID165_RS21990	radA	5379382..5380755 (-)	1374	WP_192347572.1	DNA repair protein RadA	Machinery gene
ID165_RS21995	polA	5380899..5383727 (-)	2829	WP_192347573.1	DNA polymerase I	-
ID165_RS22000	-	5384001..5384321 (+)	321	WP_192347574.1	hypothetical protein	-
ID165_RS22005	-	5384557..5385036 (-)	480	WP_225586868.1	hypothetical protein	-

Sequence

Protein

• Length: 457 a.a.
• Molecular weight: 50127.67 Da
• Isoelectric Point: 5.9798

>NTDB_id=485701 ID165_RS21990 WP_192347572.1 5379382..5380755(-) (radA) [Algoriphagus sp. Y33]
MAKIKTTFFCQNCGAQSPKWLGKCPACGEWNTYVEEVVQKEESGKGTWKSPTSGNKKASVPKKIQEVNYEESPRYVTGDN
ELDRVLGGGIVPGSLVLIGGEPGIGKSTLMLQIALILTGKKILYVSGEESEAQIKMRADRMTAENPDCYVLSETNTQQIF
QQIEALKPDLLIIDSIQTLTSQYVESAAGSVSQVRECTAELMKFAKETGTPVFLIGHITKDGSIAGPKVLEHMVDTVLQF
EGDRHMSYRILRTSKNRFGSTHELGIYEMRVEGLRPVANPSEILLTQREEVLNGVAIGAMMEGNRPLLIEIQSLVSPATY
GTPQRSSTGHDAKRLNMLLAVLEKRGGMRLGQQDVFLNVAGGLRVDDPALDLAVCASLISSYEDTPVSEHICFAAEVGLG
GEIRAVHRIENRIAEAEKLGFKKIIVSKYAVKGLDLDKYKIEVMPVSKLEEVYQGIF

Nucleotide

• Length: 1374 bp

>NTDB_id=485701 ID165_RS21990 WP_192347572.1 5379382..5380755(-) (radA) [Algoriphagus sp. Y33]
ATGGCCAAAATAAAAACCACATTCTTCTGTCAAAATTGCGGAGCTCAAAGTCCAAAATGGCTGGGAAAATGCCCTGCCTG
TGGGGAATGGAATACCTATGTGGAAGAAGTAGTTCAGAAGGAAGAATCCGGCAAAGGAACATGGAAGTCGCCAACTTCAG
GCAACAAAAAAGCAAGCGTTCCAAAGAAAATTCAGGAGGTAAATTACGAGGAGTCCCCAAGATATGTAACGGGAGATAAT
GAACTCGATAGAGTTTTGGGAGGAGGGATTGTACCTGGCTCACTTGTGCTGATCGGTGGAGAACCCGGAATAGGCAAGTC
CACCTTGATGCTTCAGATTGCATTGATTTTAACGGGGAAAAAGATTCTTTACGTCTCTGGGGAAGAAAGTGAAGCCCAGA
TCAAAATGCGCGCTGATCGGATGACTGCAGAGAATCCGGATTGCTATGTGCTTTCGGAGACAAATACCCAACAGATTTTC
CAGCAGATCGAGGCACTCAAACCCGACTTGCTGATTATAGATTCCATCCAGACACTGACTTCCCAGTATGTAGAGTCAGC
TGCAGGATCTGTATCCCAAGTCCGGGAGTGCACCGCCGAACTTATGAAATTCGCCAAAGAGACGGGCACACCCGTGTTCT
TGATCGGACATATTACCAAAGACGGATCCATAGCCGGACCAAAAGTCCTGGAACACATGGTGGATACAGTCCTGCAGTTT
GAAGGCGATAGACACATGAGCTATAGAATCCTGAGAACCTCCAAAAACCGCTTCGGGTCCACCCACGAACTGGGAATCTA
CGAGATGCGGGTGGAAGGTCTTCGCCCTGTCGCAAATCCATCAGAAATCCTGTTAACCCAAAGAGAAGAAGTTCTGAACG
GAGTTGCCATCGGTGCGATGATGGAAGGAAATCGACCCCTTCTGATCGAAATCCAGTCTTTGGTAAGTCCGGCAACCTAC
GGCACACCCCAGCGAAGCAGCACAGGACACGATGCCAAGCGCTTGAATATGCTCTTGGCGGTCTTGGAAAAGCGTGGTGG
AATGCGGCTCGGCCAGCAAGATGTCTTTCTAAATGTAGCTGGTGGACTCAGAGTGGATGATCCGGCTCTGGATCTGGCAG
TGTGTGCCTCCTTGATCTCCAGCTACGAAGACACACCCGTTTCGGAGCATATTTGCTTTGCCGCAGAAGTGGGTTTGGGC
GGAGAAATACGTGCTGTCCACCGTATAGAAAACCGTATTGCTGAGGCTGAGAAACTTGGCTTTAAAAAAATCATCGTCTC
CAAATATGCTGTGAAAGGACTGGATCTTGATAAGTATAAAATCGAAGTGATGCCGGTTAGTAAGTTGGAGGAGGTTTATC
AGGGGATTTTTTAG

Domains

Predicted by InterproScan.

• AAA domain (AAA_25) (84-222)

• Subunit ChlI of Mg-chelatase (ChlI) (345-428)

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (9-35)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Bacillus subtilis subsp. subtilis str. 168	53.07	99.781	0.53
radA	Streptococcus pneumoniae Rx1	51.528	100	0.516
radA	Streptococcus pneumoniae D39	51.528	100	0.516
radA	Streptococcus pneumoniae R6	51.528	100	0.516
radA	Streptococcus pneumoniae TIGR4	51.528	100	0.516
radA	Streptococcus mitis NCTC 12261	51.31	100	0.514
radA	Streptococcus mitis SK321	51.092	100	0.512