Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   IF103_RS02060 Genome accession   NZ_CP061944
Coordinates   468980..469381 (+) Length   133 a.a.
NCBI ID   WP_023378336.1    Uniprot ID   A0A964GGD4
Organism   Pseudomonas sp. SK2     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 463980..474381
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IF103_RS02035 (IF103_02035) pyrR 464714..465232 (-) 519 WP_023378331.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  IF103_RS02040 (IF103_02040) ruvX 465281..465706 (-) 426 WP_023378332.1 Holliday junction resolvase RuvX -
  IF103_RS02045 (IF103_02045) - 465706..466275 (-) 570 WP_023378333.1 YqgE/AlgH family protein -
  IF103_RS02050 (IF103_02050) - 466764..467669 (-) 906 WP_104882261.1 energy transducer TonB -
  IF103_RS02055 (IF103_02055) gshB 467761..468714 (-) 954 WP_023378335.1 glutathione synthase -
  IF103_RS02060 (IF103_02060) pilG 468980..469381 (+) 402 WP_023378336.1 response regulator Regulator
  IF103_RS02065 (IF103_02065) pilH 469429..469794 (+) 366 WP_023378337.1 twitching motility response regulator PilH -
  IF103_RS02070 (IF103_02070) - 469791..470345 (+) 555 WP_202675830.1 chemotaxis protein CheW -
  IF103_RS02075 (IF103_02075) - 470357..472417 (+) 2061 WP_023378339.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 133 a.a.        Molecular weight: 14729.01 Da        Isoelectric Point: 6.0790

>NTDB_id=485674 IF103_RS02060 WP_023378336.1 468980..469381(+) (pilG) [Pseudomonas sp. SK2]
MEQPLKVMVIDDSRTIRRTAQMLLGEAGCEVITASDGFDALVKIVDHQPQIIFVDVLMPRLDGYQTCAVIKHNSAYRDIP
VILLSSRDGLFDKARGRVVGSDQFLTKPFSKEELLDAIRAHVPGFAAPEQHAP

Nucleotide


Download         Length: 402 bp        

>NTDB_id=485674 IF103_RS02060 WP_023378336.1 468980..469381(+) (pilG) [Pseudomonas sp. SK2]
ATGGAACAACCCCTGAAGGTGATGGTGATCGACGATTCACGCACGATCCGCCGCACCGCGCAGATGTTGCTCGGCGAAGC
GGGCTGCGAGGTGATCACCGCCAGCGACGGCTTCGATGCCCTGGTCAAGATCGTCGACCACCAACCGCAGATCATCTTCG
TCGATGTGTTGATGCCGCGTCTGGACGGGTATCAGACCTGCGCCGTGATCAAGCACAACAGTGCCTACAGGGACATCCCG
GTCATTCTGCTGTCGTCCCGCGATGGCCTGTTCGACAAGGCTCGCGGCCGGGTGGTCGGCTCGGACCAGTTCCTGACCAA
ACCCTTCAGCAAGGAAGAGCTGCTCGACGCGATCAGGGCGCATGTCCCTGGTTTCGCCGCGCCCGAACAACACGCACCCT
GA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(7-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

71.667

90.226

0.647