Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   IF690_RS25805 Genome accession   NZ_CP061943
Coordinates   5822870..5824237 (-) Length   455 a.a.
NCBI ID   WP_202697977.1    Uniprot ID   -
Organism   Pseudomonas sp. SK3(2021)     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5817870..5829237
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IF690_RS25780 (IF690_25770) - 5818710..5818907 (-) 198 WP_202697973.1 YbdD/YjiX family protein -
  IF690_RS25785 (IF690_25775) - 5818923..5820989 (-) 2067 WP_025807569.1 carbon starvation CstA family protein -
  IF690_RS25790 (IF690_25780) - 5821199..5821660 (+) 462 WP_202697974.1 isoprenylcysteine carboxylmethyltransferase family protein -
  IF690_RS25795 (IF690_25785) - 5821719..5822087 (+) 369 WP_202697975.1 PilZ domain-containing protein -
  IF690_RS25800 (IF690_25790) - 5822112..5822840 (-) 729 WP_202697976.1 hypothetical protein -
  IF690_RS25805 (IF690_25795) radA 5822870..5824237 (-) 1368 WP_202697977.1 DNA repair protein RadA Machinery gene
  IF690_RS25810 (IF690_25800) - 5824284..5824832 (-) 549 WP_202697978.1 ankyrin repeat domain-containing protein -
  IF690_RS25815 (IF690_25805) katB 5825006..5826547 (-) 1542 WP_202697979.1 catalase KatB -
  IF690_RS25820 (IF690_25810) mscL 5826834..5827238 (+) 405 WP_016703708.1 large-conductance mechanosensitive channel protein MscL -
  IF690_RS25825 (IF690_25815) mscL 5827538..5827942 (+) 405 WP_202697980.1 large-conductance mechanosensitive channel protein MscL -
  IF690_RS25830 (IF690_25820) - 5828000..5828776 (-) 777 WP_202697981.1 ferredoxin--NADP reductase -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48768.28 Da        Isoelectric Point: 7.1317

>NTDB_id=485664 IF690_RS25805 WP_202697977.1 5822870..5824237(-) (radA) [Pseudomonas sp. SK3(2021)]
MAKAKRMYGCTECGATFPKWAGQCGECGAWNTLTETMVESGAAAAPSGRTGWAGQQAQIKTLAEVSVEEIPRFSTASGEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNIATRMAALYVTGEESQQQVAMRARRLGLPQDQLRVMTETCIETIIA
TARLEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFGMTDRGLKEVSNPSAIFLSRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEPPPGLRIIAVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=485664 IF690_RS25805 WP_202697977.1 5822870..5824237(-) (radA) [Pseudomonas sp. SK3(2021)]
ATGGCCAAGGCCAAGCGCATGTACGGCTGCACCGAGTGCGGCGCAACCTTTCCCAAGTGGGCCGGCCAGTGCGGCGAATG
CGGAGCCTGGAACACCCTGACCGAAACCATGGTGGAAAGCGGCGCCGCCGCGGCCCCCAGCGGTCGCACCGGCTGGGCCG
GGCAGCAGGCGCAGATCAAGACCCTGGCCGAGGTCAGTGTCGAAGAGATCCCGCGCTTTTCCACGGCTTCCGGCGAACTG
GACCGGGTGCTCGGCGGCGGTCTGGTCGACGGTTCGGTGGTGCTGATCGGCGGCGACCCGGGGATCGGCAAGTCGACCAT
TCTGTTGCAGACCCTGTGCAACATCGCCACCCGCATGGCAGCGCTCTACGTCACCGGTGAGGAGTCGCAGCAACAGGTGG
CGATGCGCGCCCGGCGCCTGGGCCTGCCCCAGGACCAGCTGCGGGTGATGACCGAAACCTGCATCGAAACCATCATCGCC
ACGGCCCGGCTGGAGAAGCCCAAGGTCATGGTGATCGACTCGATCCAGACCATCTTCACCGAGCAGTTGCAATCGGCCCC
TGGCGGGGTTTCCCAGGTGCGCGAAAGCGCGGCGCTGCTGGTGCGTTACGCCAAGCAGAGCGGCACGGCGATCTTCCTGG
TGGGCCACGTGACCAAGGAGGGCGCGCTGGCCGGGCCGCGGGTCCTCGAGCACATGGTCGACACCGTGCTGTATTTCGAA
GGTGAGTCCGACGGCCGCCTGCGCTTGCTGCGGGCGGTGAAGAACCGCTTCGGCGCGGTCAACGAGCTCGGCGTGTTCGG
CATGACCGACCGCGGCCTGAAAGAGGTTTCCAACCCGTCGGCGATCTTTCTCAGCCGTGCCCAGGAAGAGGTCCCGGGCA
GCGTGGTCATGGCCACCTGGGAAGGCACCCGGCCGATGCTGGTGGAAGTCCAGGCGCTGGTGGATGACAGCCACCTGGCC
AACCCGCGGCGGGTCACCCTGGGCCTGGACCAGAACCGCCTGGCGATGCTGCTGGCGGTGCTGCACCGCCACGGCGGCAT
TCCGACCCACGATCAGGACGTGTTTCTCAACGTGGTCGGCGGGGTCAAGGTGCTGGAAACCGCGTCCGACCTGGCGCTGA
TGGCGGCGGTGATGTCCAGCCTGCGCAACCGGCCGTTGCCCCACGATCTGCTGGTGTTCGGCGAAGTTGGCCTGTCCGGC
GAGGTACGCCCGGTGCCGAGCGGCCAGGAGCGCCTCAAGGAGGCGGCCAAGCACGGTTTCAAACGGGCCATCGTGCCCAA
GGGCAATGCCCCGAAAGAGCCGCCGCCGGGCCTGCGGATCATCGCGGTAACCCGTCTGGAGCAGGCGCTGGATGCGCTGT
TCGAATGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(80-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.796

100

0.49
  radA Streptococcus pneumoniae Rx1

45.87

100

0.464
  radA Streptococcus pneumoniae R6

45.87

100

0.464
  radA Streptococcus pneumoniae TIGR4

45.87

100

0.464
  radA Streptococcus pneumoniae D39

45.87

100

0.464
  radA Streptococcus mitis SK321

46.053

100

0.462
  radA Streptococcus mitis NCTC 12261

45.833

100

0.459