Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   IEN91_RS08180 Genome accession   NZ_CP061938
Coordinates   1546659..1547255 (+) Length   198 a.a.
NCBI ID   WP_003154591.1    Uniprot ID   -
Organism   Bacillus velezensis strain FIO1408     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1541659..1552255
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IEN91_RS08150 (IEN91_08150) - 1541873..1542328 (+) 456 WP_196616581.1 flavodoxin -
  IEN91_RS08155 (IEN91_08155) dapD 1542410..1543120 (+) 711 WP_196616582.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  IEN91_RS08160 (IEN91_08160) - 1543191..1544315 (+) 1125 WP_014304923.1 N-acetyldiaminopimelate deacetylase -
  IEN91_RS08165 (IEN91_08165) - 1544376..1544621 (+) 246 WP_003154596.1 YkuS family protein -
  IEN91_RS08170 (IEN91_08170) - 1544655..1545461 (-) 807 WP_003154595.1 mechanosensitive ion channel family protein -
  IEN91_RS08175 (IEN91_08175) - 1545749..1546207 (+) 459 WP_003154593.1 TlpA disulfide reductase family protein -
  IEN91_RS08180 (IEN91_08180) rok 1546659..1547255 (+) 597 WP_003154591.1 transcriptional regulator Rok Regulator
  IEN91_RS08185 (IEN91_08185) - 1547276..1548268 (-) 993 WP_014304925.1 hypothetical protein -
  IEN91_RS08190 (IEN91_08190) - 1548414..1549016 (+) 603 WP_003154587.1 molybdenum cofactor guanylyltransferase -
  IEN91_RS08195 (IEN91_08195) - 1549068..1550087 (+) 1020 WP_003154586.1 molybdopterin-synthase adenylyltransferase MoeB -
  IEN91_RS08200 (IEN91_08200) glp 1550105..1551397 (+) 1293 WP_015388302.1 gephyrin-like molybdotransferase Glp -
  IEN91_RS08205 (IEN91_08205) mobB 1551358..1551879 (+) 522 WP_041482361.1 molybdopterin-guanine dinucleotide biosynthesis protein B -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22525.57 Da        Isoelectric Point: 9.6909

>NTDB_id=485583 IEN91_RS08180 WP_003154591.1 1546659..1547255(+) (rok) [Bacillus velezensis strain FIO1408]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDNTGSLSDTKKEFRPEKKSDSLPVLAELAAQEMRSYQKPQ
TQPQSSQPQMQSITSLPAGIPDGSTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFM
QSLIKMYPEVKKPYRGQYILEGEISQETAETANDTAAE

Nucleotide


Download         Length: 597 bp        

>NTDB_id=485583 IEN91_RS08180 WP_003154591.1 1546659..1547255(+) (rok) [Bacillus velezensis strain FIO1408]
ATGTTTAATGAAAGAGAAGCGCTGCGCTTACGTTTAGAACAATTGAACGAAGCAGAGGTAAAAGTCATTCGTGAATATCA
AATAGAACGTGATAAAATATATGCAAAACTGAGAGAATTAGACAATACGGGCAGCCTGTCCGATACAAAAAAAGAGTTTC
GTCCGGAGAAAAAAAGTGACTCTCTCCCGGTGCTTGCAGAGCTTGCAGCACAGGAAATGAGAAGCTATCAAAAGCCGCAG
ACACAGCCGCAATCCTCCCAGCCGCAGATGCAGTCTATTACGTCTCTTCCCGCCGGCATTCCAGACGGTTCTACAAGAAG
AAGAAGAGGGACGGCGAGACCGGGATCAAAAGCGGCAAAACTGCGCGAAGCAGCGATTAAAACATTGAAACGCCACAATG
CAGCGATCAAAAGTTCCGAACTGCAAAAGGAAATTGAAAAGGAAAGCGGCCTTGAAATTCCTAATATGACAACATTTATG
CAAAGCTTAATTAAAATGTATCCGGAAGTGAAAAAACCATACCGCGGCCAATATATTCTTGAGGGAGAAATTTCTCAGGA
AACAGCAGAAACGGCAAATGATACGGCTGCTGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

86.082

97.98

0.843