Detailed information NTG0485552

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: J9265_RS01485
• Genome accession: NZ_CP072847
• Coordinates: 293874..294881 (+)
• Length: 335 a.a.
• NCBI ID: WP_000116737.1
• Uniprot ID: O51804
• Organism: Vibrio cholerae strain A1552
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 288874..299881

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J9265_RS01450 (J9265_01450)	ftsB	288931..289215 (+)	285	WP_001263189.1	cell division protein FtsB	-
J9265_RS01455 (J9265_01455)	ispD	289212..289910 (+)	699	WP_001061951.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
J9265_RS01460 (J9265_01460)	ispF	289907..290383 (+)	477	WP_000619209.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
J9265_RS01465 (J9265_01465)	truD	290413..291498 (+)	1086	WP_000129752.1	tRNA pseudouridine(13) synthase TruD	-
J9265_RS01470 (J9265_01470)	surE	291500..292252 (+)	753	WP_000698379.1	5'/3'-nucleotidase SurE	-
J9265_RS01475 (J9265_01475)	-	292245..292871 (+)	627	WP_000002982.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
J9265_RS01480 (J9265_01480)	nlpD	292871..293800 (+)	930	WP_053036405.1	murein hydrolase activator NlpD	-
J9265_RS01485 (J9265_01485)	rpoS	293874..294881 (+)	1008	WP_000116737.1	RNA polymerase sigma factor RpoS	Regulator
J9265_RS01490 (J9265_01490)	mutS	294974..297562 (-)	2589	WP_001894770.1	DNA mismatch repair protein MutS	-
J9265_RS01495 (J9265_01495)	cysM	297830..298717 (-)	888	WP_001279365.1	cysteine synthase CysM	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 38534.39 Da
• Isoelectric Point: 4.3648

>NTDB_id=485552 J9265_RS01485 WP_000116737.1 293874..294881(+) (rpoS) [Vibrio cholerae strain A1552]
MSVSNTVTKVEEFDFEDEALEVLETDAELTSDEELVAVEGASEDVREEFDASAKSLDATQMYLSEIGFSPLLTAEEEVLY
ARRALRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALM
NQTRTIRLPIHVVKELNIYLRTARELSQRLDHEPTPEEIALELDRPVDDVTKMLRLNERISSVDTPIGGDGDKALLDILP
DSHNADPEFSTQDDDIRESLLNWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILVK
QGLNMEALFNVEYDN

Nucleotide

• Length: 1008 bp

>NTDB_id=485552 J9265_RS01485 WP_000116737.1 293874..294881(+) (rpoS) [Vibrio cholerae strain A1552]
ATGAGTGTCAGCAATACCGTAACCAAAGTAGAAGAGTTCGATTTTGAAGATGAAGCACTGGAAGTGCTAGAAACTGATGC
CGAGCTCACCAGTGATGAAGAATTAGTTGCTGTTGAAGGGGCAAGTGAAGACGTTCGTGAAGAGTTTGATGCTTCTGCGA
AAAGTCTTGATGCGACCCAGATGTATCTCAGCGAAATTGGTTTTTCACCGCTCCTTACTGCCGAAGAAGAAGTGCTTTAT
GCTCGTCGTGCCTTACGTGGTGATGAAGCCGCACGTAAACGCATGATTGAAAGTAACTTGCGTCTGGTGGTAAAAATTTC
ACGCCGTTACAGCAACCGAGGATTAGCACTGCTCGATCTGATTGAAGAAGGTAATCTTGGTCTGATCCGTGCGGTTGAGA
AATTCGATCCAGAACGCGGTTTCCGCTTCTCTACCTACGCAACATGGTGGATCCGTCAAACCATTGAACGTGCGCTGATG
AACCAAACACGCACCATTCGTCTACCGATTCATGTCGTCAAAGAGCTGAACATTTATTTGCGTACTGCTCGCGAATTATC
ACAGCGCCTTGACCACGAACCTACACCAGAAGAAATTGCTCTTGAGTTAGACCGACCTGTCGATGATGTCACTAAGATGC
TGCGTCTTAACGAACGGATCAGCTCAGTGGATACGCCAATTGGTGGGGATGGAGATAAGGCACTGCTGGATATTTTGCCA
GACTCTCACAATGCCGATCCTGAGTTTTCAACTCAAGATGATGACATTCGTGAATCGCTGCTCAACTGGTTGGATGAACT
TAATCCAAAGCAAAAAGAAGTGCTTGCGCGTCGCTTTGGGCTTCTTGGCTATGAACCATCGACCTTGGAAGAAGTGGGTC
GTGAGATCAATCTCACTCGTGAGCGTGTTCGCCAAATCCAAGTGGAAGGTCTACGTCGTCTGCGTGAGATTTTGGTGAAA
CAAGGTTTGAATATGGAAGCGCTGTTTAACGTCGAATACGACAACTAA

Domains

Predicted by InterProScan.

• Sigma-70, region 4 (Sigma70_r4) (263-316)

• Sigma-70 region 3 (Sigma70_r3) (175-249)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (57-90)

• Sigma-70 region 2 (Sigma70_r2) (95-164)

3D structure

• AlphaFold DB: O51804

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	100	100	1