Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   J9312_RS19265 Genome accession   NZ_CP072845
Coordinates   3594663..3595796 (-) Length   377 a.a.
NCBI ID   WP_015251020.1    Uniprot ID   -
Organism   Bacillus subtilis strain XP     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3589663..3600796
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J9312_RS19225 (J9312_19090) ywnA 3589793..3590194 (-) 402 WP_003227734.1 Rrf2 family transcriptional regulator -
  J9312_RS19230 (J9312_19095) ureC 3590329..3592038 (-) 1710 WP_014481168.1 urease subunit alpha -
  J9312_RS19235 (J9312_19100) ureB 3592035..3592409 (-) 375 WP_015251023.1 urease subunit beta -
  J9312_RS19240 (J9312_19105) ureA 3592406..3592723 (-) 318 WP_046160948.1 urease subunit gamma -
  J9312_RS19245 (J9312_19110) - 3592918..3593076 (-) 159 WP_120363539.1 hypothetical protein -
  J9312_RS21675 - 3593343..3593555 (-) 213 Protein_3726 urea ABC transporter substrate-binding protein -
  J9312_RS19255 (J9312_19120) csbD 3593768..3593956 (-) 189 WP_003227718.1 stress response protein CsbD -
  J9312_RS19260 (J9312_19125) - 3594029..3594508 (-) 480 WP_003244390.1 hypothetical protein -
  J9312_RS19265 (J9312_19130) rapC 3594663..3595796 (-) 1134 WP_015251020.1 response regulator aspartate phosphatase RapB Regulator
  J9312_RS19270 (J9312_19135) moaA 3595988..3597013 (-) 1026 WP_003243488.1 GTP 3',8-cyclase MoaA -
  J9312_RS19275 (J9312_19140) fdhD 3597029..3597817 (-) 789 WP_003227709.1 formate dehydrogenase accessory sulfurtransferase FdhD -
  J9312_RS19280 (J9312_19145) - 3598050..3598211 (-) 162 WP_003227706.1 hypothetical protein -
  J9312_RS19285 (J9312_19150) ywmD 3598306..3598980 (-) 675 WP_041334709.1 vWA domain-containing protein -
  J9312_RS19290 (J9312_19155) - 3599033..3599173 (-) 141 WP_014481180.1 hypothetical protein -
  J9312_RS19295 (J9312_19160) ywmC 3599304..3599987 (-) 684 WP_041334706.1 vWA domain-containing protein -

Sequence

Protein


Download         Length: 377 a.a.        Molecular weight: 45038.16 Da        Isoelectric Point: 4.7546

>NTDB_id=485527 J9312_RS19265 WP_015251020.1 3594663..3595796(-) (rapC) [Bacillus subtilis strain XP]
MAAYEIPSSQVGVKINKWYKHILAFQVADAVKLKEEIDLDIEQMEEDQLLLLYYQLISYRHQIMLDYVKPDLHEESQLQY
RELIKTLESNQDSISGLSEYYFHLFRGMYEFEQNNYISAISFYRKAEKMLAFVEDEIERAEFHFKVAEVFYIMKQTHFSM
NHAVQALETYKAHDFYRVRRIQCHFVISGNYIDYRNYEKALEHLDDAYRLALLEGQPRLIGSALYNIGNCYDDKGELDQA
AEYFEKALPVFEDYQLEQLPKALFSLTRVLFKKQDSEAAIRYYEKGIAIAQKRNDFFSLAKYKFLQALYVESVNLDMIQE
VFDYMEEKGLYVYIEEFALDAASYFSHREQYKEAVYFYEKAVSMREMIQRNDCLYEV

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=485527 J9312_RS19265 WP_015251020.1 3594663..3595796(-) (rapC) [Bacillus subtilis strain XP]
ATGGCCGCGTACGAGATCCCGTCATCTCAAGTAGGAGTGAAAATCAATAAGTGGTATAAGCACATTTTAGCATTTCAAGT
GGCTGATGCCGTAAAGCTGAAAGAAGAAATTGATCTAGATATCGAACAGATGGAAGAGGATCAGCTGCTTCTCCTGTATT
ATCAGCTGATCAGCTACCGGCACCAAATTATGCTGGATTATGTAAAGCCTGACCTGCACGAGGAATCTCAGCTTCAATAT
CGTGAATTGATCAAAACGCTGGAAAGCAATCAGGACAGCATCTCCGGATTATCTGAGTATTATTTTCACTTGTTTAGAGG
AATGTACGAATTTGAACAGAACAATTACATCTCGGCTATATCCTTTTATCGGAAAGCTGAGAAGATGCTTGCGTTTGTAG
AAGATGAAATTGAAAGAGCGGAATTTCATTTTAAAGTGGCGGAAGTCTTTTATATTATGAAGCAGACGCACTTTTCCATG
AACCATGCCGTACAGGCGCTGGAGACGTATAAGGCTCACGATTTTTATAGAGTCAGAAGAATTCAATGCCATTTCGTCAT
ATCAGGAAACTACATTGACTACAGAAATTATGAAAAAGCGCTTGAACATTTAGATGACGCGTATCGCCTTGCTTTATTGG
AAGGACAGCCCCGTTTAATCGGATCAGCCCTTTATAACATTGGGAATTGCTATGATGACAAGGGGGAGCTGGATCAGGCC
GCCGAATACTTTGAAAAAGCGCTTCCTGTCTTCGAGGATTATCAGCTGGAACAGCTTCCAAAAGCGCTCTTCAGCCTGAC
TCGCGTTCTTTTCAAAAAACAAGATAGCGAAGCCGCGATACGGTACTATGAAAAAGGGATTGCCATTGCCCAAAAACGAA
ACGACTTCTTCAGTCTGGCAAAATATAAATTTCTGCAGGCATTATATGTGGAATCTGTCAATTTGGATATGATTCAAGAA
GTATTTGATTATATGGAAGAAAAGGGCCTGTATGTATATATTGAAGAATTTGCTTTAGATGCTGCCTCTTATTTCAGTCA
TCGCGAACAATATAAAGAAGCGGTGTATTTTTATGAAAAAGCGGTCAGCATGAGAGAGATGATTCAAAGGAACGATTGCT
TATATGAAGTATGA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-66)

MalT-like TPR region (TPR_MalT)

(154-305)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

42.632

100

0.43
  rapF Bacillus subtilis subsp. subtilis str. 168

42.667

99.469

0.424