Detailed information    

insolico Bioinformatically predicted

Overview

Name   comQ   Type   Regulator
Locus tag   J9312_RS16060 Genome accession   NZ_CP072845
Coordinates   2989161..2990024 (-) Length   287 a.a.
NCBI ID   WP_014480705.1    Uniprot ID   Q9FAF1
Organism   Bacillus subtilis strain XP     
Function   modification of ComX; production of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 2984161..2995024
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J9312_RS16035 (J9312_15915) comA 2984508..2985152 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  J9312_RS16040 (J9312_15920) - 2985233..2986855 (-) 1623 Protein_3087 sensor histidine kinase -
  J9312_RS16045 (J9312_15925) - 2986953..2988200 (+) 1248 WP_031600262.1 IS256-like element ISBsu2 family transposase -
  J9312_RS16050 (J9312_15930) - 2988158..2988922 (-) 765 WP_264379345.1 hypothetical protein -
  J9312_RS16055 (J9312_15935) comX 2988938..2989159 (-) 222 WP_014480704.1 competence pheromone ComX -
  J9312_RS16060 (J9312_15940) comQ 2989161..2990024 (-) 864 WP_014480705.1 polyprenyl synthetase family protein Regulator
  J9312_RS16065 (J9312_15945) degQ 2990209..2990349 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  J9312_RS16070 (J9312_15950) - 2990571..2990696 (+) 126 WP_003228793.1 hypothetical protein -
  J9312_RS16075 (J9312_15955) - 2990811..2991179 (+) 369 WP_046381300.1 hypothetical protein -
  J9312_RS16080 (J9312_15960) pdeH 2991155..2992384 (-) 1230 WP_046381301.1 cyclic di-GMP phosphodiesterase -
  J9312_RS16085 (J9312_15965) pncB 2992521..2993993 (-) 1473 WP_003228788.1 nicotinate phosphoribosyltransferase -
  J9312_RS16090 (J9312_15970) pncA 2994009..2994560 (-) 552 WP_014477836.1 cysteine hydrolase family protein -

Sequence

Protein


Download         Length: 287 a.a.        Molecular weight: 32882.57 Da        Isoelectric Point: 5.2201

>NTDB_id=485511 J9312_RS16060 WP_014480705.1 2989161..2990024(-) (comQ) [Bacillus subtilis strain XP]
MKEIVDENILNEDLKVKLISFIKEKKQFSFAELAYYHYIAFDGKNDKAIELLASGIELLILSADIFDDIEDKDNLQASWM
KLDPSIATNAATALYTLSLQVIGSVSNHPKLLSLTLQYSLQSLQGQHVDLNLTASSESEYIEMIKLKSGSLVTLPSILGV
YLATGEYNETVEEYSRYLGIVEQIANDHYGLYYPNYNDFKTRHTLAFNYLKNKFNQSSIDLLNFYAQENHMINNLEDLKG
KLRESGVIQYLNVIKNLAVENFKESFKKLRLDEQRKNKLLIQLLRGI

Nucleotide


Download         Length: 864 bp        

>NTDB_id=485511 J9312_RS16060 WP_014480705.1 2989161..2990024(-) (comQ) [Bacillus subtilis strain XP]
ATGAAGGAGATTGTGGATGAAAATATTTTAAATGAGGACTTAAAAGTGAAGCTCATTTCTTTTATCAAAGAAAAAAAACA
ATTTTCATTTGCAGAACTGGCTTATTACCATTACATAGCATTTGATGGAAAAAACGACAAAGCAATTGAGTTATTGGCGT
CAGGTATAGAACTTTTAATTTTATCTGCGGACATTTTTGACGATATTGAGGATAAGGACAATCTTCAGGCTTCTTGGATG
AAATTAGATCCTTCTATAGCAACTAACGCAGCTACCGCACTTTATACATTAAGTCTGCAAGTAATAGGTTCAGTCTCAAA
TCATCCAAAACTTTTAAGCCTTACTTTGCAATATTCACTCCAATCTTTACAAGGACAACATGTAGATTTGAATTTAACAG
CCTCATCAGAATCAGAGTATATTGAAATGATTAAACTTAAGTCGGGTTCTCTGGTAACATTGCCCAGTATTCTTGGTGTA
TATCTGGCAACTGGAGAATATAATGAAACAGTTGAGGAGTATTCACGTTATTTAGGTATAGTCGAGCAAATTGCAAATGA
TCACTATGGACTTTATTACCCTAACTATAATGACTTCAAAACTAGACATACGCTTGCCTTCAATTATCTTAAAAATAAAT
TTAACCAATCATCAATTGACTTATTAAATTTTTATGCGCAAGAAAATCATATGATAAATAATTTGGAAGATTTGAAGGGA
AAGTTAAGAGAATCAGGTGTAATACAATATTTGAATGTTATAAAAAATTTAGCAGTGGAAAATTTTAAGGAATCATTCAA
AAAACTGAGATTAGATGAACAAAGAAAAAATAAATTACTTATTCAATTATTAAGGGGGATTTAA

Domains

Predicted by InterProScan.

Polyprenyl synthetase (polyprenyl_synt)

(45-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9FAF1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comQ Bacillus subtilis subsp. subtilis str. 168

45

97.561

0.439