Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   IE382_RS21285 Genome accession   NZ_CP061870
Coordinates   3952586..3953275 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus subtilis strain FX-1     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3947586..3958275
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IE382_RS21250 (IE382_21150) flgN 3947766..3948248 (-) 483 WP_041351273.1 flagellar protein FlgN -
  IE382_RS21255 (IE382_21155) flgM 3948264..3948530 (-) 267 WP_014478128.1 flagellar biosynthesis anti-sigma factor FlgM -
  IE382_RS21260 (IE382_21160) yvyF 3948611..3949030 (-) 420 WP_041351272.1 TIGR03826 family flagellar region protein -
  IE382_RS21265 (IE382_21165) comFC 3949104..3949826 (-) 723 WP_242304419.1 comF operon protein ComFC Machinery gene
  IE382_RS21270 (IE382_21170) comFB 3949790..3950086 (-) 297 WP_003227989.1 late competence protein ComFB -
  IE382_RS21275 (IE382_21175) comFA 3950146..3951537 (-) 1392 WP_003243962.1 ATP-dependent helicase ComFA Machinery gene
  IE382_RS21280 (IE382_21180) fakBA 3951643..3952488 (-) 846 WP_003227986.1 DegV family protein -
  IE382_RS21285 (IE382_21185) degU 3952586..3953275 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  IE382_RS21290 (IE382_21190) degS 3953358..3954515 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  IE382_RS21295 (IE382_21195) yvyE 3954732..3955385 (+) 654 WP_003227979.1 YigZ family protein -
  IE382_RS21300 (IE382_21200) tagV 3955385..3956560 (+) 1176 WP_017695311.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  IE382_RS21305 (IE382_21205) tagO 3956633..3957709 (-) 1077 WP_242304421.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=485470 IE382_RS21285 WP_003219701.1 3952586..3953275(-) (degU) [Bacillus subtilis strain FX-1]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=485470 IE382_RS21285 WP_003219701.1 3952586..3953275(-) (degU) [Bacillus subtilis strain FX-1]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGGGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTCCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGAATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1