Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   IE382_RS17350 Genome accession   NZ_CP061870
Coordinates   3170020..3170766 (-) Length   248 a.a.
NCBI ID   WP_026113741.1    Uniprot ID   A0AAQ3EXH2
Organism   Bacillus subtilis strain FX-1     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3165020..3175766
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IE382_RS17325 (IE382_17235) mreC 3165426..3166298 (-) 873 WP_003222609.1 rod shape-determining protein MreC -
  IE382_RS17330 (IE382_17240) mreB 3166329..3167342 (-) 1014 WP_003229650.1 cell shape-determining protein MreB -
  IE382_RS17335 (IE382_17245) radC 3167434..3168129 (-) 696 WP_003246034.1 DNA repair protein RadC -
  IE382_RS17340 (IE382_17250) maf 3168166..3168735 (-) 570 WP_004398496.1 Maf family nucleotide pyrophosphatase -
  IE382_RS17345 (IE382_17255) spoIIB 3168888..3169886 (-) 999 WP_041336238.1 stage II sporulation protein SpoIIB -
  IE382_RS17350 (IE382_17260) comC 3170020..3170766 (-) 747 WP_026113741.1 A24 family peptidase Machinery gene
  IE382_RS17355 (IE382_17265) folC 3170906..3172198 (-) 1293 WP_003229640.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  IE382_RS17360 (IE382_17270) valS 3172258..3174900 (-) 2643 WP_144458757.1 valine--tRNA ligase -
  IE382_RS17365 (IE382_17275) - 3175348..3175539 (+) 192 WP_003222590.1 hypothetical protein -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26422.99 Da        Isoelectric Point: 9.7944

>NTDB_id=485458 IE382_RS17350 WP_026113741.1 3170020..3170766(-) (comC) [Bacillus subtilis strain FX-1]
MLSILFIFGLILGSFYYTAGCRIPLHLSIIAPRSSCPFCRRTLTPAELIPILSFLFQKGKCKSCGHRISFMYPAAELVTA
CLFAAAGIRFGTSLELFPAVVFISLLIIVAVTDLHFMLIPNRILIFFLPFLAAARLISPLDSWYAGLLGAAAGFLFLAVI
AAITHGGVGGGDIKLFAVIGFVLGVKMLAAAFFFSVLIGALYGAAAVLTGRLAKRQPLPFAPAIAAGSILAYLYGDSIIS
FYIKMALG

Nucleotide


Download         Length: 747 bp        

>NTDB_id=485458 IE382_RS17350 WP_026113741.1 3170020..3170766(-) (comC) [Bacillus subtilis strain FX-1]
ATGCTATCCATTCTTTTTATCTTTGGGCTTATTCTTGGTTCTTTTTACTATACGGCCGGGTGCCGTATCCCCTTACATCT
ATCTATTATTGCGCCTCGTTCATCATGCCCGTTTTGCCGGCGGACATTAACTCCTGCAGAATTAATTCCCATCCTGTCAT
TCCTATTTCAAAAAGGTAAATGTAAAAGCTGCGGGCATAGGATTTCTTTTATGTATCCCGCAGCAGAGCTTGTGACAGCG
TGTTTATTTGCCGCCGCAGGAATACGTTTTGGCACGTCGCTGGAACTGTTTCCCGCTGTGGTGTTTATCTCTCTTCTCAT
TATTGTTGCAGTGACAGATCTTCATTTTATGCTGATTCCAAATCGAATATTGATTTTCTTTCTTCCCTTTTTGGCGGCCG
CGAGATTGATTTCTCCGCTTGATTCCTGGTATGCAGGCCTGTTAGGTGCGGCAGCCGGATTTCTGTTTCTGGCTGTAATT
GCCGCAATCACCCATGGGGGGGTAGGGGGAGGAGATATTAAATTATTTGCGGTGATTGGCTTTGTGCTTGGTGTGAAAAT
GCTGGCAGCTGCCTTTTTCTTTTCTGTTTTAATAGGTGCATTATATGGAGCGGCAGCCGTTCTGACTGGTAGACTCGCTA
AAAGGCAGCCGCTTCCCTTCGCCCCCGCTATAGCCGCAGGGAGCATTTTAGCCTATTTATACGGTGACTCTATCATTTCT
TTTTATATCAAAATGGCATTGGGCTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)

Type IV leader peptidase family (Peptidase_A24)

(101-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

99.194

100

0.992