Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   J9312_RS08475 Genome accession   NZ_CP072845
Coordinates   1596699..1597724 (+) Length   341 a.a.
NCBI ID   WP_003245451.1    Uniprot ID   O34470
Organism   Bacillus subtilis strain XP     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1591699..1602724
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J9312_RS08440 (J9312_08390) ylbE 1591999..1592238 (+) 240 WP_003232231.1 YlbE-like family protein -
  J9312_RS08445 (J9312_08395) ylbF 1592354..1592803 (+) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  J9312_RS08450 (J9312_08400) ylbG 1592858..1593130 (+) 273 WP_069964462.1 YlbG family protein -
  J9312_RS08455 (J9312_08405) rsmD 1593453..1594007 (+) 555 WP_047182572.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  J9312_RS08460 (J9312_08410) coaD 1594012..1594497 (+) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  J9312_RS08465 (J9312_08415) spoVV 1594508..1595734 (-) 1227 WP_014479716.1 dipicolinic acid transporter SpoVV -
  J9312_RS08470 (J9312_08420) ylbK 1595915..1596697 (+) 783 WP_003232221.1 patatin family protein -
  J9312_RS08475 (J9312_08425) sepM 1596699..1597724 (+) 1026 WP_003245451.1 protease DdcP Regulator
  J9312_RS08480 (J9312_08430) tmcAL 1597741..1598988 (-) 1248 WP_014479717.1 nucleotidyltransferase -
  J9312_RS08485 (J9312_08435) - 1598985..1599170 (-) 186 WP_003232215.1 hypothetical protein -
  J9312_RS08490 (J9312_08440) ylbN 1599198..1599716 (+) 519 WP_014479718.1 YceD family protein -
  J9312_RS08495 (J9312_08445) rpmF 1599738..1599917 (+) 180 WP_003154457.1 50S ribosomal protein L32 -
  J9312_RS08500 (J9312_08450) gerR 1600063..1600644 (+) 582 WP_014479720.1 sporulation specific transcriptional regulator GerR -
  J9312_RS08505 (J9312_08455) ylbP 1600701..1601183 (-) 483 WP_014476736.1 N-acetyltransferase -
  J9312_RS08510 (J9312_08460) panEA 1601343..1602239 (+) 897 WP_014479721.1 2-dehydropantoate 2-reductase -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 37651.23 Da        Isoelectric Point: 6.5347

>NTDB_id=485453 J9312_RS08475 WP_003245451.1 1596699..1597724(+) (sepM) [Bacillus subtilis strain XP]
MLRKKHFSWMLVILILIAVLSFIKLPYYITKPGEATELASLIKVEGGYPEKGSLSLMTVKVGPANPFTYVWAKMHPYYEI
VPDESIKEEGESDKEYMKRQLQMMKSSQENAVIAAYQKAGKKVSYSFNGIYASSVVENMPAKGKIEVGDKIISADGKNYQ
SAEKLIDYISSKKAGDKVTLKIEREEKEKRVTLTLKQFPDEPDRAGIGVSLYTDRNVKVEPDIDFEIENIGGPSAGLMMS
LEIYNQLTKPDETKGYDIAGTGTIDVDGKVGPIGGIDQKVVAADKAGKDIFFAPNQNGASNSDYKNAVKTAKDIDSNMKI
VPVDTMQDAIDYLNKLKAKST

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=485453 J9312_RS08475 WP_003245451.1 1596699..1597724(+) (sepM) [Bacillus subtilis strain XP]
TTGCTACGTAAAAAACATTTTAGCTGGATGCTCGTCATCCTCATACTGATCGCCGTTTTATCATTTATAAAACTTCCATA
CTATATTACAAAACCGGGAGAAGCGACAGAGCTTGCTTCATTGATAAAAGTGGAGGGAGGCTACCCGGAAAAAGGAAGCC
TGTCCTTAATGACTGTTAAAGTGGGACCGGCTAATCCGTTTACATATGTGTGGGCAAAGATGCACCCTTATTATGAAATT
GTTCCTGATGAGAGCATTAAGGAGGAAGGCGAGTCAGATAAGGAGTATATGAAAAGACAGCTCCAAATGATGAAAAGCTC
GCAAGAAAATGCGGTTATAGCCGCCTATCAAAAGGCAGGAAAAAAAGTCAGCTATTCCTTTAACGGCATATACGCAAGCT
CTGTTGTAGAAAACATGCCGGCAAAAGGGAAAATAGAAGTCGGTGATAAAATCATCAGCGCAGACGGCAAAAACTATCAG
TCTGCTGAAAAGCTAATTGATTATATCAGCAGCAAAAAAGCGGGAGATAAAGTCACGTTAAAGATCGAAAGAGAAGAAAA
AGAAAAGCGTGTCACCCTTACGTTAAAACAATTTCCTGATGAGCCGGATCGGGCAGGAATCGGAGTTTCGCTTTATACAG
ACAGAAACGTGAAGGTAGAGCCTGATATTGATTTTGAAATTGAAAATATTGGCGGTCCGTCAGCAGGGTTAATGATGTCC
CTTGAAATCTATAATCAGCTGACAAAACCAGACGAAACAAAAGGCTACGATATTGCGGGAACAGGTACCATTGATGTTGA
TGGGAAAGTAGGCCCGATCGGCGGCATTGATCAAAAAGTCGTCGCCGCAGACAAAGCCGGAAAAGACATTTTCTTCGCGC
CAAATCAAAACGGCGCCAGCAATTCCGATTATAAGAACGCAGTAAAAACAGCAAAAGATATTGATTCAAATATGAAGATT
GTGCCTGTTGATACCATGCAGGATGCGATTGATTATTTGAATAAGCTGAAAGCGAAAAGCACCTGA

Domains

Predicted by InterProScan.

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(232-331)

Peptidase family M50 (Peptidase_M50)

(59-220)

PDZ domain (PDZ_2)

(128-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2KJP

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

39.143

100

0.402