Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   IE382_RS15795 Genome accession   NZ_CP061870
Coordinates   2904489..2905256 (-) Length   255 a.a.
NCBI ID   WP_014477369.1    Uniprot ID   A0A0D1L7G7
Organism   Bacillus subtilis strain FX-1     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2899489..2910256
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IE382_RS15775 (IE382_15715) ppsR 2899664..2900476 (-) 813 WP_003230064.1 pyruvate, water dikinase regulatory protein -
  IE382_RS15780 (IE382_15720) ccpN 2900502..2901140 (-) 639 WP_003237058.1 transcriptional regulator CcpN -
  IE382_RS15785 (IE382_15725) glyS 2901273..2903312 (-) 2040 WP_014480291.1 glycine--tRNA ligase subunit beta -
  IE382_RS15790 (IE382_15730) glyQ 2903305..2904192 (-) 888 WP_003226213.1 glycine--tRNA ligase subunit alpha -
  IE382_RS15795 (IE382_15735) recO 2904489..2905256 (-) 768 WP_014477369.1 DNA repair protein RecO Machinery gene
  IE382_RS15800 (IE382_15740) yqzL 2905293..2905436 (-) 144 WP_003230053.1 YqzL family protein -
  IE382_RS15805 (IE382_15745) era 2905584..2906489 (-) 906 WP_144459388.1 GTPase Era -
  IE382_RS15810 (IE382_15750) cdd 2906470..2906880 (-) 411 WP_144459386.1 cytidine deaminase -
  IE382_RS15815 (IE382_15755) unpK 2906999..2907370 (-) 372 WP_041333781.1 diacylglycerol kinase family protein -
  IE382_RS15820 (IE382_15760) ybeY 2907351..2907824 (-) 474 WP_144459385.1 rRNA maturation RNase YbeY -
  IE382_RS15825 (IE382_15765) pgpH 2907825..2909960 (-) 2136 Protein_3076 cyclic-di-AMP phosphodiesterase PgpH -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29342.05 Da        Isoelectric Point: 8.3080

>NTDB_id=485451 IE382_RS15795 WP_014477369.1 2904489..2905256(-) (recO) [Bacillus subtilis strain FX-1]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGAKKPNSRLSAVSQPFLYGSFLMQKTSGLGTLQQGEMILSMRG
IREDLFLTAYAAYIAELVDRGTEEKKPNPYLFEFILESLKQLNEGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSQDG
TFHFSVRDNGFICHRCFEKDPYRIPIKPQTARLLRLFYYFDLSRLGNVSLKEETKAELKQVIDLYYEEYSGLYLKSKRFL
DQMESMKHLMGENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=485451 IE382_RS15795 WP_014477369.1 2904489..2905256(-) (recO) [Bacillus subtilis strain FX-1]
ATGCTGACAAAATGTGAAGGAATCGTTCTTCGCACAAATGATTACGGAGAGACGAATAAAATCGTAACTTTACTGACAAG
AGAACACGGAAAAATAGGTGTTATGGCACGAGGCGCCAAAAAACCGAACAGCCGTTTATCAGCAGTCAGCCAGCCCTTTT
TGTATGGTTCTTTCTTAATGCAAAAAACATCGGGCCTCGGAACGCTTCAGCAGGGGGAAATGATCCTCAGCATGAGAGGC
ATCAGGGAAGACTTGTTTTTAACAGCATATGCTGCCTATATTGCTGAGTTAGTCGACAGAGGCACAGAAGAAAAAAAGCC
AAATCCTTATTTATTTGAATTCATATTAGAATCATTAAAACAGCTGAATGAAGGAACAGATCCGGATGTTATCACCTTCA
TTGTTCAAATGAAGATGCTCGGTGTCATGGGCCTGTATCCTGAGCTGAATCATTGTGTACATTGTAAGAGCCAAGACGGA
ACCTTTCATTTCTCTGTTCGTGATAATGGTTTTATATGCCACCGCTGCTTTGAAAAAGATCCTTACAGGATACCGATTAA
ACCGCAAACGGCAAGGCTGTTAAGACTCTTTTACTATTTTGATCTGTCGAGGCTCGGCAATGTGTCCTTAAAAGAGGAAA
CAAAAGCTGAATTAAAGCAAGTGATTGATTTATATTACGAAGAATATTCGGGATTGTATTTAAAATCAAAGCGCTTTTTA
GATCAAATGGAAAGCATGAAACATCTTATGGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-75)

Recombination protein O C terminal (RecO_C)

(82-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D1L7G7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

99.608

100

0.996