Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   J9312_RS07020 Genome accession   NZ_CP072845
Coordinates   1335248..1336384 (+) Length   378 a.a.
NCBI ID   WP_015252291.1    Uniprot ID   -
Organism   Bacillus subtilis strain XP     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 1330248..1341384
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J9312_RS07000 (J9312_06970) uxaA 1330698..1332191 (+) 1494 WP_032730467.1 UxaA family hydrolase -
  J9312_RS07005 (J9312_06975) yjnA 1332230..1332994 (-) 765 WP_003245643.1 sulfite exporter TauE/SafE family protein -
  J9312_RS07010 (J9312_06980) bstD 1333219..1333683 (-) 465 WP_032730469.1 DinB family protein -
  J9312_RS07015 (J9312_06985) yjoB 1333832..1335103 (+) 1272 WP_003245490.1 ATPase YjoB -
  J9312_RS07020 (J9312_06990) rapC 1335248..1336384 (+) 1137 WP_015252291.1 response regulator aspartate phosphatase RapA Regulator
  J9312_RS07025 (J9312_06995) phrA 1336374..1336508 (+) 135 WP_003245487.1 phosphatase RapA inhibitor PhrA -
  J9312_RS07030 (J9312_07000) yjpA 1336539..1336785 (-) 247 Protein_1319 YciI family protein -
  J9312_RS07035 (J9312_07005) xlyB 1336906..1337859 (+) 954 WP_014479545.1 N-acetylmuramoyl-L-alanine amidase -
  J9312_RS07040 (J9312_07010) yjqA 1337899..1338276 (-) 378 WP_014479546.1 PH domain-containing protein -
  J9312_RS07045 (J9312_07015) pghB 1338381..1338983 (+) 603 WP_014479547.1 poly-gamma-glutamate hydrolase family protein -
  J9312_RS07050 (J9312_07020) xpdC 1339060..1339896 (+) 837 WP_003245071.1 manganese catalase family protein -
  J9312_RS07055 (J9312_07025) xkdA 1339940..1340536 (-) 597 WP_003232721.1 ImmA/IrrE family metallo-endopeptidase -
  J9312_RS07060 (J9312_07030) xre 1340699..1341040 (-) 342 WP_069964123.1 HTH-type transcriptional regulator Xre -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 45046.23 Da        Isoelectric Point: 4.7218

>NTDB_id=485442 J9312_RS07020 WP_015252291.1 1335248..1336384(+) (rapC) [Bacillus subtilis strain XP]
MRMKQTIPSSYVGLKINEWYTHIRQFHVAEAERVKLEVEREIEDMEEDQDLLLYYSLMEFRHRVMLDYIKPFGEDTSQLE
FSELLEDIEGNQYKLTGLLEYYFNFFRGMYEFKQKMFVSAMMYYKRAEKNLALVSDDIEKAEFAFKMAEIFYNLKQTYVS
MSYAVQALETYQMYETYTVRRIQCEFVIAGNYDDMQYPERALPHLELALDLAKKEGNPRLISSALYNLGNCYEKMGELQK
AAEYFEKSVSICKSEKFDNLPHSIYSLTQVLYKQKNDAEAQKKYREGLEIARQYSDELFVELFQFLHALYGKNIDTESVS
HTFQFLEEHMLYPYIEELAHDAAQFYIENGQPEKALSFYEKMVHAQKQIQRGDCLYEI

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=485442 J9312_RS07020 WP_015252291.1 1335248..1336384(+) (rapC) [Bacillus subtilis strain XP]
TTGAGGATGAAGCAGACGATTCCGTCCTCTTATGTCGGGCTTAAAATTAATGAATGGTATACTCATATCCGGCAGTTCCA
CGTCGCTGAAGCCGAACGGGTCAAGCTCGAAGTAGAAAGAGAAATTGAGGATATGGAAGAAGACCAAGATTTGCTGCTGT
ATTATTCTTTAATGGAGTTCAGGCATCGTGTCATGCTGGATTACATTAAGCCTTTTGGAGAGGACACGTCGCAGCTAGAG
TTTTCAGAATTATTAGAAGACATCGAAGGGAATCAGTACAAGCTGACAGGGCTTCTCGAATATTACTTTAATTTTTTTCG
AGGAATGTATGAATTTAAGCAGAAGATGTTTGTCAGTGCCATGATGTATTATAAACGGGCAGAAAAGAATCTTGCCCTCG
TCTCGGATGATATTGAGAAAGCCGAGTTTGCTTTTAAAATGGCTGAGATTTTTTACAATTTAAAACAAACCTATGTTTCG
ATGAGCTACGCCGTTCAGGCATTAGAAACATACCAAATGTATGAAACGTACACCGTCCGCAGAATCCAATGTGAATTCGT
TATTGCAGGTAATTATGATGATATGCAGTATCCAGAAAGAGCATTGCCCCACTTAGAACTGGCTTTAGATCTTGCAAAGA
AGGAAGGCAATCCCCGCCTGATCAGTTCCGCCCTATATAATCTCGGAAACTGCTATGAGAAAATGGGTGAACTGCAAAAG
GCAGCCGAATACTTTGAGAAATCTGTTTCTATTTGCAAGTCGGAAAAGTTCGATAATCTTCCGCATTCTATCTACTCTTT
AACACAAGTTCTGTATAAACAAAAAAATGACGCCGAAGCGCAAAAAAAGTATCGTGAAGGATTGGAAATCGCCCGTCAAT
ACAGTGATGAATTATTCGTGGAGCTTTTTCAATTTTTACATGCGTTATACGGAAAAAACATTGACACAGAATCGGTCTCA
CACACCTTTCAATTTCTTGAAGAACATATGCTGTATCCTTATATTGAAGAGCTGGCGCATGATGCTGCCCAATTCTATAT
AGAAAACGGACAGCCCGAAAAAGCACTTTCATTTTATGAGAAAATGGTGCACGCACAAAAACAAATCCAGAGAGGAGATT
GTTTATATGAAATCTAA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-67)

Tetratricopeptide repeat (TPR_12)

(221-293)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

44.947

99.471

0.447
  rapF Bacillus subtilis subsp. subtilis str. 168

41.689

100

0.418