Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   IE382_RS15260 Genome accession   NZ_CP061870
Coordinates   2812286..2813089 (-) Length   267 a.a.
NCBI ID   WP_003226427.1    Uniprot ID   -
Organism   Bacillus subtilis strain FX-1     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2807286..2818089
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IE382_RS15235 (IE382_15170) glpQ 2808425..2809156 (-) 732 WP_041334913.1 glycerophosphodiester phosphodiesterase -
  IE382_RS15240 (IE382_15175) yqiI 2809235..2809855 (-) 621 WP_080031089.1 N-acetylmuramoyl-L-alanine amidase -
  IE382_RS15245 (IE382_15180) - 2809875..2810171 (-) 297 WP_014480225.1 hypothetical protein -
  IE382_RS15250 (IE382_15185) - 2810479..2810631 (+) 153 WP_129137781.1 hypothetical protein -
  IE382_RS15255 (IE382_15190) yqiG 2810703..2811821 (+) 1119 WP_017696437.1 NADH-dependent flavin oxidoreductase -
  IE382_RS15260 (IE382_15195) spo0A 2812286..2813089 (-) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  IE382_RS15265 (IE382_15200) spoIVB 2813365..2814645 (-) 1281 WP_041334924.1 SpoIVB peptidase -
  IE382_RS15270 (IE382_15205) recN 2814820..2816550 (-) 1731 WP_017696435.1 DNA repair protein RecN Machinery gene
  IE382_RS15275 (IE382_15210) argR 2816587..2817036 (-) 450 WP_017696434.1 arginine repressor ArgR -
  IE382_RS15280 (IE382_15215) yqxC 2817134..2817979 (-) 846 WP_003230264.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29691.19 Da        Isoelectric Point: 6.3913

>NTDB_id=485440 IE382_RS15260 WP_003226427.1 2812286..2813089(-) (spo0A) [Bacillus subtilis strain FX-1]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPEPKKKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=485440 IE382_RS15260 WP_003226427.1 2812286..2813089(-) (spo0A) [Bacillus subtilis strain FX-1]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTGGTAAGCCTGTTAAGTGAATATATAGAAGGACAGGA
AGACATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGCCTGTCGCTGTTTAAAGAAAAAGATCCCGATGTGCTCG
TATTAGATATTATTATGCCGCATTTAGACGGACTTGCGGTTTTAGAGAGGCTGAGGGAATCAGATCTGAAAAAACAGCCG
AATGTCATTATGCTGACAGCCTTTGGGCAGGAAGATGTCACGAAAAAGGCCGTCGATTTAGGCGCGTCCTACTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTCGGTCATATCCGCCAGGTCAGCGGAAATGCCAGCAGTGTGACGCATCGTGCGC
CATCATCGCAAAGCAGTATTATACGCAGCAGCCAGCCTGAACCAAAGAAGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCAGCCCATATTAAAGGCTATCTCTATCTGCGCGAAGCAATCTCAATGGTATACAATGACAT
CGAATTGCTCGGCAGCATTACAAAAGTCCTCTATCCGGACATCGCCAAAAAATTTAACACAACCGCAAGCCGTGTAGAAA
GAGCGATCCGTCATGCAATTGAAGTGGCATGGAGCAGAGGAAACATTGATTCCATTTCCTCGTTGTTTGGTTATACTGTC
AGCATGACAAAAGCTAAACCTACCAACAGTGAATTCATTGCAATGGTTGCGGATAAGCTGAGGTTAGAGCATAAGGCTTC
TTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

100

100

1