Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   IE382_RS10250 Genome accession   NZ_CP061870
Coordinates   1960048..1960941 (+) Length   297 a.a.
NCBI ID   WP_144458855.1    Uniprot ID   A0AAQ3IEN3
Organism   Bacillus subtilis strain FX-1     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1955048..1965941
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IE382_RS10230 (IE382_10180) - 1955718..1957448 (+) 1731 WP_017694863.1 hypothetical protein -
  IE382_RS10235 (IE382_10185) ylqH 1957445..1957726 (+) 282 WP_003232001.1 FlhB-like flagellar biosynthesis protein -
  IE382_RS10240 (IE382_10190) sucC 1957899..1959056 (+) 1158 WP_003244732.1 ADP-forming succinate--CoA ligase subunit beta -
  IE382_RS10245 (IE382_10195) sucD 1959085..1959987 (+) 903 WP_003238566.1 succinate--CoA ligase subunit alpha -
  IE382_RS10250 (IE382_10200) dprA 1960048..1960941 (+) 894 WP_144458855.1 DNA-processing protein DprA Machinery gene
  IE382_RS10255 (IE382_10205) topA 1961129..1963204 (+) 2076 WP_003245599.1 type I DNA topoisomerase -
  IE382_RS10260 (IE382_10210) trmFO 1963280..1964587 (+) 1308 WP_003244725.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  IE382_RS10265 (IE382_10215) xerC 1964655..1965569 (+) 915 WP_003231988.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 297 a.a.        Molecular weight: 33020.28 Da        Isoelectric Point: 9.6984

>NTDB_id=485435 IE382_RS10250 WP_144458855.1 1960048..1960941(+) (dprA) [Bacillus subtilis strain FX-1]
MDQAAACLTICRINQLLSPSLLLKWWKADPSMSLTSPVLQTVTRDQIKAAALKNEIEQLYPKLQRVLAAYREQGINTIPI
SSKQYPFWLKSIYDPPAVLFAKGDMTLLSKGRKIGIVGTRNPTAYGKQVVNHLTKEICRKDWVIVSGLASGIDGMSHAAS
IKEKGRTIGVIAGGFQHIYPRENLQLADHMAKHHILLSEHPPETKPQKWHFPMRNRIISGLSEGVIVVQGKEKSGSLITA
YQALEQGREVFAVPGSLFDPYAGGPIKLIQQGAKAIWSAEDIFEELPERNVQYTEPF

Nucleotide


Download         Length: 894 bp        

>NTDB_id=485435 IE382_RS10250 WP_144458855.1 1960048..1960941(+) (dprA) [Bacillus subtilis strain FX-1]
TTGGATCAGGCCGCTGCCTGCCTAACGATTTGCAGAATCAATCAATTATTATCCCCATCCCTTCTATTAAAATGGTGGAA
AGCCGATCCGTCTATGTCGCTGACATCACCTGTGTTACAAACGGTTACTCGTGATCAAATAAAAGCAGCTGCATTAAAAA
ACGAAATAGAACAACTTTATCCAAAGCTCCAGCGTGTACTTGCTGCTTATCGTGAGCAAGGCATTAACACCATCCCTATT
TCTTCAAAGCAATATCCTTTCTGGCTTAAAAGCATTTATGATCCCCCCGCCGTTCTGTTTGCAAAAGGTGATATGACTCT
TCTTTCGAAAGGGAGAAAAATTGGAATTGTAGGGACAAGAAATCCAACAGCTTATGGGAAACAAGTGGTCAATCATCTTA
CAAAAGAGATCTGTCGTAAAGATTGGGTGATTGTCAGCGGACTGGCGTCTGGGATAGACGGAATGTCCCATGCTGCAAGT
ATTAAGGAGAAGGGGCGGACAATTGGCGTCATTGCAGGCGGATTTCAACACATTTATCCCCGAGAAAACCTTCAGTTAGC
AGACCACATGGCTAAACACCATATCCTGCTGTCAGAGCACCCACCTGAAACGAAACCCCAAAAATGGCATTTCCCTATGA
GAAACCGTATTATCAGCGGACTAAGTGAAGGCGTTATTGTCGTTCAGGGCAAAGAAAAAAGCGGTTCGCTGATTACTGCC
TATCAAGCATTGGAACAAGGGAGAGAGGTATTTGCCGTACCCGGTTCATTATTTGACCCTTACGCCGGAGGTCCTATAAA
ACTGATCCAGCAGGGGGCTAAAGCCATATGGTCAGCAGAGGATATTTTCGAGGAACTTCCTGAGAGAAACGTTCAATATA
CGGAACCCTTTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(71-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

98.316

100

0.983
  dprA Lactococcus lactis subsp. cremoris KW2

42.105

89.562

0.377