Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   IE382_RS09420 Genome accession   NZ_CP061870
Coordinates   1795045..1795323 (+) Length   92 a.a.
NCBI ID   WP_003244728.1    Uniprot ID   A0A199WGU6
Organism   Bacillus subtilis strain FX-1     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1790045..1800323
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IE382_RS09400 (IE382_09350) - 1791233..1792144 (+) 912 WP_041335746.1 ketopantoate reductase family protein -
  IE382_RS09405 (IE382_09355) ampS 1792178..1793410 (-) 1233 WP_003232341.1 aminopeptidase -
  IE382_RS09410 (IE382_09360) ykpC 1793519..1793653 (-) 135 WP_003238865.1 protein YkpC -
  IE382_RS09415 (IE382_09365) mreBH 1793754..1794761 (-) 1008 WP_003245743.1 cell shape-determining protein MreBH -
  IE382_RS09420 (IE382_09370) abrB 1795045..1795323 (+) 279 WP_003244728.1 transcriptional regulator AbhA Regulator
  IE382_RS09425 (IE382_09375) kinC 1795513..1796799 (+) 1287 WP_121591764.1 two-component sensor histidine kinase KinC -
  IE382_RS09430 (IE382_09380) ykqA 1796815..1797642 (+) 828 WP_017696825.1 gamma-glutamylcyclotransferase -
  IE382_RS09435 (IE382_09385) ktrC 1797705..1798370 (+) 666 WP_003222311.1 Ktr system potassium transporter KtrC -
  IE382_RS09440 (IE382_09390) ade 1798526..1800259 (+) 1734 WP_017696826.1 adenine deaminase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10256.07 Da        Isoelectric Point: 5.8808

>NTDB_id=485434 IE382_RS09420 WP_003244728.1 1795045..1795323(+) (abrB) [Bacillus subtilis strain FX-1]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIILKKYKPHGVCLMTGEITSENKEYGNGKITLSPEGAQ
LLLEEIQAALKE

Nucleotide


Download         Length: 279 bp        

>NTDB_id=485434 IE382_RS09420 WP_003244728.1 1795045..1795323(+) (abrB) [Bacillus subtilis strain FX-1]
ATGAAATCAATAGGTGTTGTGAGAAAAGTAGATGAATTAGGCCGCATTGTCATGCCGATTGAGTTGAGACGGGCATTGGA
TATTGCCATAAAAGACAGCATTGAGTTTTTTGTTGACGGAGATAAAATTATCTTGAAAAAGTACAAACCTCATGGCGTTT
GTTTAATGACTGGAGAAATCACTTCAGAAAATAAAGAATACGGCAACGGTAAAATTACGCTAAGCCCTGAGGGTGCACAG
CTGCTTCTGGAAGAAATTCAAGCCGCTTTAAAAGAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WGU6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

58.242

98.913

0.576