Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   IE382_RS09180 Genome accession   NZ_CP061870
Coordinates   1750488..1750952 (-) Length   154 a.a.
NCBI ID   WP_003232406.1    Uniprot ID   G4NVM0
Organism   Bacillus subtilis strain FX-1     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1745488..1755952
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IE382_RS09160 (IE382_09115) kinA 1745955..1747775 (+) 1821 WP_144459492.1 sporulation histidine kinase KinA -
  IE382_RS09165 (IE382_09120) dapX 1747785..1748966 (-) 1182 WP_017697268.1 aminotransferase A -
  IE382_RS09170 (IE382_09125) - 1749168..1749329 (-) 162 WP_003245246.1 hypothetical protein -
  IE382_RS09175 (IE382_09130) cheV 1749533..1750444 (+) 912 WP_014476655.1 chemotaxis protein CheV -
  IE382_RS09180 (IE382_09135) kre 1750488..1750952 (-) 465 WP_003232406.1 YkyB family protein Regulator
  IE382_RS09185 (IE382_09140) ykuC 1751078..1752370 (-) 1293 WP_017697269.1 MFS transporter -
  IE382_RS09190 (IE382_09145) ltdD 1752446..1752940 (-) 495 WP_072557193.1 L,D-transpeptidase family protein -
  IE382_RS09195 (IE382_09150) ppeE 1752997..1753857 (-) 861 WP_017697271.1 metallophosphoesterase -
  IE382_RS09200 (IE382_09155) fadH 1754000..1754764 (+) 765 WP_017697272.1 2,4-dienoyl-CoA reductase -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17895.71 Da        Isoelectric Point: 10.3545

>NTDB_id=485432 IE382_RS09180 WP_003232406.1 1750488..1750952(-) (kre) [Bacillus subtilis strain FX-1]
MDDHAYTKDLQPTVENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSKNPRFSQQQSDVLISIGD
YYFHMPPTKEDFEHLPHLGTLNQSYRNPKAQMSLTKAKHLLQEYVGMKEKPLVPNRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=485432 IE382_RS09180 WP_003232406.1 1750488..1750952(-) (kre) [Bacillus subtilis strain FX-1]
ATGGACGACCATGCATATACGAAAGATCTGCAGCCAACCGTAGAAAATCTTTCAAAAGCAGTTTACACTGTGAACCGCCA
TGCCAAAACCGCCCCCAACCCTAAATACCTATATCTGCTGAAAAAACGGGCTTTGCAAAAGCTTGTCAAAGAAGGTAAAG
GAAAGAAAATAGGGCTTCATTTTTCAAAAAATCCAAGGTTCAGCCAACAGCAATCGGACGTGCTTATCTCAATCGGAGAC
TACTATTTTCACATGCCTCCAACTAAAGAAGACTTCGAACATCTTCCGCATTTAGGTACACTTAATCAATCGTACCGAAA
TCCTAAAGCTCAAATGTCTTTAACAAAAGCGAAACACCTATTGCAAGAATATGTCGGCATGAAAGAAAAACCGCTAGTGC
CAAATCGCCAGCAGCCAGCTTACCATAAACCGGTCTTTAAAAAACTTGGCGAGAGTTACTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(14-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVM0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

100

100

1