Detailed information    

insolico Bioinformatically predicted

Overview

Name   med   Type   Regulator
Locus tag   IE382_RS07680 Genome accession   NZ_CP061870
Coordinates   1481014..1481967 (+) Length   317 a.a.
NCBI ID   WP_144459412.1    Uniprot ID   -
Organism   Bacillus subtilis strain FX-1     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1476014..1486967
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IE382_RS07655 (IE382_07620) argF 1477845..1478804 (+) 960 WP_095843628.1 ornithine carbamoyltransferase -
  IE382_RS07660 (IE382_07625) yjzC 1478890..1479069 (+) 180 WP_003245356.1 YjzC family protein -
  IE382_RS07665 (IE382_07630) yjzD 1479116..1479301 (-) 186 WP_003245236.1 DUF2929 domain-containing protein -
  IE382_RS07670 (IE382_07635) - 1479550..1480284 (+) 735 WP_041340422.1 hypothetical protein -
  IE382_RS07675 (IE382_07640) - 1480366..1480923 (+) 558 WP_041351861.1 hypothetical protein -
  IE382_RS07680 (IE382_07645) med 1481014..1481967 (+) 954 WP_144459412.1 transcriptional regulator Med Regulator
  IE382_RS07685 (IE382_07650) comZ 1481982..1482173 (+) 192 WP_003224559.1 ComG operon transcriptional repressor ComZ Regulator
  IE382_RS07690 (IE382_07655) yjzB 1482203..1482430 (-) 228 WP_121591633.1 spore coat protein YjzB -
  IE382_RS07695 (IE382_07660) fabH 1482595..1483533 (+) 939 WP_003232971.1 beta-ketoacyl-ACP synthase III -
  IE382_RS07700 (IE382_07665) fabF 1483556..1484797 (+) 1242 WP_003244890.1 beta-ketoacyl-ACP synthase II -
  IE382_RS07705 (IE382_07670) yjaZ 1484873..1485658 (+) 786 WP_041340409.1 DUF2268 domain-containing protein -
  IE382_RS07710 (IE382_07675) appD 1485851..1486837 (+) 987 WP_003232965.1 oligopeptide ABC transporter ATP-binding protein AppD -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35314.85 Da        Isoelectric Point: 4.6031

>NTDB_id=485423 IE382_RS07680 WP_144459412.1 1481014..1481967(+) (med) [Bacillus subtilis strain FX-1]
MITRLVMIFSVLLLLSGCGQTPFKGKIEKVGMLFPDTINDLVWGTKGYKGLLNIQSKYNVDVYYKEGVKTEEDIVNAIED
FHKRGVNLLYGHGSEYAEVFNLVGEDYPDMEFVISNAKAKADNVTSVHFSGEAMGFFGGMTAAHMSKTNQVGVIASFTWQ
PEVDGFIKGAKYENPDIEVNTKYTDHWDDDTTAVKLYQKMKNEGADVVYPAGDGYNVPVIQQIKKDGLYAIGYVTDQSDM
GENTVLTSTVQNVDKAYEIIAEQFNKGTLEGGDHYYDLNTGVVEMGTFSPLVDKDFQQRIAKLIKTYNKTGELPKNE

Nucleotide


Download         Length: 954 bp        

>NTDB_id=485423 IE382_RS07680 WP_144459412.1 1481014..1481967(+) (med) [Bacillus subtilis strain FX-1]
TTGATCACAAGGCTTGTCATGATCTTTTCTGTCCTCCTTTTATTGAGTGGATGTGGACAAACTCCGTTCAAAGGAAAAAT
TGAGAAGGTCGGCATGCTCTTTCCTGATACGATTAATGACCTCGTATGGGGCACAAAAGGGTATAAAGGATTACTGAATA
TACAATCCAAATACAATGTGGACGTCTATTATAAAGAAGGCGTTAAAACAGAAGAAGATATCGTAAATGCGATTGAGGAT
TTTCATAAGAGGGGCGTCAATCTGCTCTATGGCCATGGGAGTGAATATGCTGAGGTGTTTAACTTGGTCGGCGAAGATTA
TCCAGATATGGAATTCGTCATTTCCAATGCGAAAGCGAAAGCTGATAATGTAACGAGTGTCCATTTTAGCGGGGAAGCAA
TGGGCTTTTTTGGAGGAATGACTGCTGCCCATATGTCGAAAACGAATCAGGTCGGTGTAATTGCTTCCTTTACGTGGCAG
CCTGAGGTTGACGGTTTTATCAAAGGGGCCAAGTATGAAAATCCGGATATAGAGGTAAATACGAAATATACGGATCATTG
GGATGATGATACAACAGCAGTAAAGCTTTATCAGAAAATGAAGAACGAAGGCGCGGATGTTGTGTATCCCGCCGGAGACG
GGTATAATGTTCCTGTTATTCAGCAAATCAAAAAAGACGGTCTTTATGCCATTGGCTACGTCACAGATCAATCGGATATG
GGCGAGAATACCGTATTAACCAGCACGGTGCAAAATGTGGACAAGGCCTATGAAATCATTGCTGAACAATTTAATAAAGG
CACCCTTGAGGGCGGCGATCATTACTACGACCTGAATACGGGAGTCGTTGAGATGGGAACATTCAGCCCGCTCGTCGATA
AAGACTTTCAGCAAAGAATCGCTAAGCTGATCAAAACATACAACAAAACAGGCGAGCTGCCAAAAAACGAGTAA

Domains

Predicted by InterproScan.

ABC transporter substrate-binding protein PnrA-like (Bmp)

(27-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  med Bacillus subtilis subsp. subtilis str. 168

99.054

100

0.991