Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   J9312_RS04320 Genome accession   NZ_CP072845
Coordinates   837097..837813 (+) Length   238 a.a.
NCBI ID   WP_003233679.1    Uniprot ID   P39796
Organism   Bacillus subtilis strain XP     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 832097..842813
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J9312_RS04290 (J9312_04270) - 832599..832736 (+) 138 WP_101172061.1 hypothetical protein -
  J9312_RS04295 (J9312_04275) yflB 832755..833147 (+) 393 WP_003233692.1 DUF1992 domain-containing protein -
  J9312_RS04300 (J9312_04280) - 833272..833476 (+) 205 Protein_794 sodium:alanine symporter family protein -
  J9312_RS04305 (J9312_04285) - 833472..833801 (-) 330 Protein_795 spore germination protein -
  J9312_RS04310 (J9312_04290) treP 833908..835320 (+) 1413 WP_069964053.1 PTS system trehalose-specific EIIBC component -
  J9312_RS04315 (J9312_04295) treC 835391..837076 (+) 1686 WP_014479164.1 alpha,alpha-phosphotrehalase -
  J9312_RS04320 (J9312_04300) treR 837097..837813 (+) 717 WP_003233679.1 trehalose operon repressor Regulator
  J9312_RS04325 (J9312_04305) hypO 837953..838618 (+) 666 WP_014476144.1 NAD(P)H-dependent oxidoreductase -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27841.82 Da        Isoelectric Point: 7.1736

>NTDB_id=485417 J9312_RS04320 WP_003233679.1 837097..837813(+) (treR) [Bacillus subtilis strain XP]
MKVNKFITIYKDIAQQIEGGRWKAEEILPSEHELTAQYGTSRETVRKALHMLAQNGYIQKIRGKGSVVLNREKMQFPVSG
LVSFKELAQTLGKETKTTVHKFGLEPPSELIQKQLRANLDDDIWEVIRSRKIDGEHVILDKDYFFRKHVPHLTKEICENS
IYEYIEGELGLSISYAQKEIVAEPCTDEDRELLDLRGYDHMVVVRNYVFLEDTSLFQYTESRHRLDKFRFVDFARRGK

Nucleotide


Download         Length: 717 bp        

>NTDB_id=485417 J9312_RS04320 WP_003233679.1 837097..837813(+) (treR) [Bacillus subtilis strain XP]
ATGAAGGTGAATAAATTCATCACAATTTATAAAGACATCGCACAGCAAATTGAAGGCGGCCGATGGAAAGCGGAGGAGAT
TCTTCCGTCTGAACATGAGTTGACCGCACAGTACGGTACATCAAGAGAAACGGTCCGAAAGGCGCTTCATATGCTCGCGC
AAAACGGTTATATCCAGAAAATCAGGGGAAAAGGCTCCGTCGTGCTCAATCGTGAAAAAATGCAGTTTCCCGTTTCGGGC
CTTGTCAGCTTCAAGGAGCTCGCGCAAACGCTTGGCAAAGAAACGAAAACAACTGTACACAAATTCGGGCTGGAGCCTCC
GTCAGAGCTGATCCAAAAACAGCTCCGGGCCAATCTGGATGACGACATCTGGGAAGTCATCAGGTCTAGAAAGATTGACG
GGGAACATGTGATTTTGGACAAGGATTACTTTTTCAGAAAGCATGTCCCTCACCTGACGAAAGAAATTTGTGAAAACTCC
ATATATGAATATATAGAAGGAGAGCTCGGTCTTTCGATCAGTTACGCCCAAAAAGAAATTGTCGCCGAGCCGTGTACGGA
CGAGGACAGAGAGCTGCTCGATTTACGCGGCTATGACCATATGGTCGTGGTGAGAAACTACGTCTTTTTGGAGGATACCA
GTTTGTTTCAATATACGGAAAGCAGACACCGTCTCGACAAATTCCGATTTGTTGATTTTGCGCGGCGGGGGAAATGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, gntR family (GntR)

(8-68)

UTRA domain (UTRA)

(91-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2OGG

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

42.308

98.319

0.416