Detailed information    

insolico Bioinformatically predicted

Overview

Name   subA/fin   Type   Machinery gene
Locus tag   J9312_RS00335 Genome accession   NZ_CP072845
Coordinates   61031..61261 (+) Length   76 a.a.
NCBI ID   WP_003243417.1    Uniprot ID   A0ABU0VCT2
Organism   Bacillus subtilis strain XP     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 56031..66261
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J9312_RS00305 (J9312_00305) ridA 56195..56572 (+) 378 WP_003226738.1 2-iminobutanoate/2-iminopropanoate deaminase -
  J9312_RS00310 (J9312_00310) spoVG 56767..57060 (+) 294 WP_003218346.1 septation regulator SpoVG -
  J9312_RS00315 (J9312_00315) glmU 57253..58623 (+) 1371 WP_069963937.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -
  J9312_RS00320 (J9312_00320) prsS 58646..59599 (+) 954 WP_069837180.1 ribose-phosphate diphosphokinase -
  J9312_RS00325 (J9312_00325) rplYB 59684..60298 (+) 615 WP_069963938.1 50S ribosomal protein L25/general stress protein Ctc -
  J9312_RS00330 (J9312_00330) pth 60405..60971 (+) 567 WP_003226727.1 aminoacyl-tRNA hydrolase -
  J9312_RS00335 (J9312_00335) subA/fin 61031..61261 (+) 231 WP_003243417.1 anti-sigma-F factor Fin Machinery gene
  J9312_RS00340 (J9312_00340) mfd 61331..64864 (+) 3534 WP_003243453.1 transcription-repair coupling factor -
  J9312_RS00345 (J9312_00345) spoVT 65000..65536 (+) 537 WP_003218365.1 stage V sporulation protein T -

Sequence

Protein


Download         Length: 76 a.a.        Molecular weight: 8847.81 Da        Isoelectric Point: 5.3895

>NTDB_id=485396 J9312_RS00335 WP_003243417.1 61031..61261(+) (subA/fin) [Bacillus subtilis strain XP]
MALHYYCRHCGVKVGSLESSMVSTDSLGFQHLTNEERNDMISYKENGDVHVLTICEDCQEALDRNPHYHEYHTFIQ

Nucleotide


Download         Length: 231 bp        

>NTDB_id=485396 J9312_RS00335 WP_003243417.1 61031..61261(+) (subA/fin) [Bacillus subtilis strain XP]
ATGGCTTTGCATTATTATTGTCGTCATTGCGGAGTGAAAGTAGGCAGTCTCGAATCTTCAATGGTATCGACAGACTCACT
TGGATTTCAGCACTTAACAAATGAGGAAAGAAACGATATGATTTCTTATAAAGAAAATGGAGATGTCCATGTTTTGACGA
TATGTGAAGACTGCCAAGAGGCGCTTGACCGAAATCCGCATTACCACGAATATCACACATTTATTCAATAA

Domains

Predicted by InterProScan.

Anti-sigma-F factor Fin (Fin)

(1-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  subA/fin Bacillus subtilis subsp. subtilis str. 168

100

100

1