Detailed information NTG0485380

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: J8617_RS19855
• Genome accession: NZ_CP072802
• Coordinates: 4094742..4095734 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain PK5074
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 4089742..4100734

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J8617_RS19825 (J8617_19815)	ispD	4089803..4090513 (+)	711	WP_000246135.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
J8617_RS19830 (J8617_19820)	ispF	4090513..4090992 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
J8617_RS19835 (J8617_19825)	truD	4090989..4092038 (+)	1050	WP_000568946.1	tRNA pseudouridine(13) synthase TruD	-
J8617_RS19840 (J8617_19830)	surE	4092019..4092780 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
J8617_RS19845 (J8617_19835)	pcm	4092774..4093400 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
J8617_RS19850 (J8617_19840)	nlpD	4093585..4094679 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
J8617_RS19855 (J8617_19845)	rpoS	4094742..4095734 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
J8617_RS19860 (J8617_19850)	ygbN	4095828..4097192 (-)	1365	WP_000104441.1	GntP family transporter	-
J8617_RS19865 (J8617_19855)	ygbM	4097281..4098057 (-)	777	WP_001136934.1	HPr family phosphocarrier protein	-
J8617_RS19870 (J8617_19860)	ygbL	4098062..4098700 (-)	639	WP_001278994.1	aldolase	-
J8617_RS19875 (J8617_19865)	otnK	4098697..4099959 (-)	1263	WP_000590403.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=485380 J8617_RS19855 WP_000081550.1 4094742..4095734(+) (rpoS) [Escherichia coli strain PK5074]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=485380 J8617_RS19855 WP_000081550.1 4094742..4095734(+) (rpoS) [Escherichia coli strain PK5074]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715