Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   IE339_RS18590 Genome accession   NZ_CP061868
Coordinates   3537496..3539214 (-) Length   572 a.a.
NCBI ID   WP_242170011.1    Uniprot ID   -
Organism   Priestia koreensis strain FS-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3532496..3544214
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IE339_RS18565 (IE339_18545) - 3533553..3533804 (+) 252 WP_242169999.1 DUF2627 domain-containing protein -
  IE339_RS18570 (IE339_18550) - 3533852..3534568 (-) 717 WP_242170002.1 glycerophosphodiester phosphodiesterase -
  IE339_RS18575 (IE339_18555) - 3534681..3534818 (+) 138 WP_242170005.1 YycC family protein -
  IE339_RS18580 (IE339_18560) spo0A 3534989..3535777 (-) 789 WP_242170007.1 sporulation transcription factor Spo0A -
  IE339_RS18585 (IE339_18565) spoIVB 3535975..3537255 (-) 1281 WP_242170009.1 SpoIVB peptidase -
  IE339_RS18590 (IE339_18570) recN 3537496..3539214 (-) 1719 WP_242170011.1 DNA repair protein RecN Machinery gene
  IE339_RS18595 (IE339_18575) argR 3539350..3539799 (-) 450 WP_053402180.1 transcriptional regulator ArgR -
  IE339_RS18600 (IE339_18580) - 3540055..3540897 (-) 843 WP_242170013.1 TlyA family RNA methyltransferase -
  IE339_RS18605 (IE339_18585) dxs 3540894..3542798 (-) 1905 WP_242170015.1 1-deoxy-D-xylulose-5-phosphate synthase -
  IE339_RS18610 (IE339_18590) - 3543237..3544136 (-) 900 WP_242170017.1 polyprenyl synthetase family protein -

Sequence

Protein


Download         Length: 572 a.a.        Molecular weight: 64368.17 Da        Isoelectric Point: 5.0293

>NTDB_id=485379 IE339_RS18590 WP_242170011.1 3537496..3539214(-) (recN) [Priestia koreensis strain FS-1]
MLAELSIKNFAIIDELTTSFEKGLTVLTGETGAGKSIIIDAIQLLVGGRGSSEFVRHGTNRAEIEGLFLIGADHPCYEKA
AEVGIDVQDDMLVLRRDITTNGKSICRINGKLVTLGILREIGQTLIDIHGQHEHQDLMNQDRHLAMLDQYGGEKIAKALE
EYQQVYERYMDLKKQLNKLSENEQKRAHRLDLIQFQLEEIKSANLQPNEDNDLMEERMKISNFEKIYNALNDAYNALHGE
QRGLDWVGLAMGNAEDIQELDDAYVEISEAVSSSFYQLEDASFKIRQQLDMLEYDPKRLDYIESRISEINQLKRKYGQSV
EEILEYAATIEDEMDQIENRDTHLSNIQAELKAVAKDLLVEAKNVSALRHKLGEKLTAGIHQELKELYMAKTIFEVKFTK
VTPSLQDIELDGEHVKFTRSGIDHVEFYLSTNPGEPLKPLAKIASGGELSRIMIALKSIFSKHQGVTSIIFDEVDTGVSG
RVAQAIGEKIYRISTGSQVLCISHLPQVAAMANTHLFISKKVKDNRTSTAVEPLSQSEKVKEIGRMIAGAEITDLTKEHA
KELLDLADRFKH

Nucleotide


Download         Length: 1719 bp        

>NTDB_id=485379 IE339_RS18590 WP_242170011.1 3537496..3539214(-) (recN) [Priestia koreensis strain FS-1]
TTGTTAGCAGAGCTATCCATTAAAAATTTCGCGATTATTGATGAATTGACGACTTCCTTTGAAAAGGGTCTGACGGTCTT
AACCGGAGAAACAGGTGCTGGGAAATCAATTATTATTGATGCCATTCAGCTTCTTGTCGGTGGAAGAGGTTCCTCAGAGT
TTGTGCGTCATGGAACAAATCGAGCAGAAATTGAAGGACTATTTCTAATTGGGGCAGATCACCCGTGCTATGAAAAGGCA
GCAGAAGTTGGAATTGATGTTCAGGACGATATGCTTGTACTTCGCAGAGATATTACGACAAACGGAAAAAGCATTTGCCG
CATTAACGGAAAGCTTGTAACGTTAGGCATTTTACGAGAAATTGGACAAACTCTAATTGATATACATGGTCAGCACGAGC
ATCAGGATTTAATGAATCAAGACCGTCATTTGGCTATGCTTGATCAATATGGCGGAGAGAAAATTGCCAAAGCGCTTGAA
GAGTATCAGCAAGTATACGAGCGCTACATGGATTTGAAGAAGCAGCTAAATAAGCTTTCAGAAAACGAGCAGAAACGAGC
GCACCGCTTGGATTTAATTCAATTTCAGCTAGAGGAAATTAAATCAGCGAACTTACAGCCAAACGAAGACAATGATCTAA
TGGAAGAACGAATGAAAATTTCAAACTTTGAAAAGATCTATAACGCGCTAAACGACGCTTATAATGCTCTCCACGGGGAG
CAAAGAGGACTAGACTGGGTCGGTCTTGCCATGGGAAATGCAGAGGATATCCAAGAGCTTGACGATGCCTATGTGGAAAT
TTCTGAAGCCGTATCGAGTTCTTTTTATCAGCTTGAGGATGCGTCTTTTAAAATTCGTCAGCAGCTGGATATGTTGGAGT
ACGATCCAAAACGCTTAGATTATATTGAGTCACGTATTAGCGAAATCAATCAATTGAAGCGTAAATATGGCCAAAGCGTA
GAAGAAATTTTGGAATACGCGGCTACGATTGAAGACGAAATGGACCAAATTGAAAATCGAGACACTCATCTCTCAAACAT
TCAAGCAGAACTTAAAGCGGTCGCAAAAGATTTATTGGTCGAAGCTAAAAATGTCTCGGCTCTTCGTCATAAGCTAGGTG
AAAAGCTAACGGCGGGTATTCATCAGGAACTAAAAGAACTGTACATGGCAAAAACAATCTTCGAAGTGAAATTTACGAAA
GTGACGCCGTCTCTTCAAGACATTGAACTGGACGGAGAGCATGTGAAATTCACTCGCAGTGGAATTGATCACGTTGAATT
TTATTTATCAACGAACCCAGGGGAGCCGCTGAAGCCGCTCGCGAAAATCGCTTCTGGTGGAGAACTGTCCCGGATTATGA
TCGCGCTAAAGAGCATTTTCTCAAAGCATCAGGGCGTCACGTCGATTATCTTTGATGAAGTGGATACCGGCGTAAGCGGT
CGTGTAGCTCAGGCGATCGGTGAGAAAATTTACCGCATCTCGACAGGTTCTCAGGTGCTGTGTATTTCTCATTTGCCTCA
GGTTGCGGCGATGGCAAACACTCACTTATTTATTTCAAAAAAGGTGAAAGACAACCGTACATCTACGGCTGTAGAACCGC
TGAGTCAGTCTGAAAAAGTAAAAGAAATCGGACGAATGATTGCCGGTGCTGAAATTACGGATTTAACGAAAGAACACGCG
AAAGAGCTGCTTGATTTAGCGGATCGTTTCAAACATTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_23)

(4-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

63.874

100

0.64