Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   IE339_RS03895 Genome accession   NZ_CP061868
Coordinates   788910..790730 (+) Length   606 a.a.
NCBI ID   WP_242173712.1    Uniprot ID   -
Organism   Priestia koreensis strain FS-1     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 783910..795730
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IE339_RS03875 (IE339_03880) - 784029..784703 (-) 675 WP_242173706.1 TerC family protein -
  IE339_RS03880 (IE339_03885) mecA 785105..785773 (+) 669 WP_053399455.1 adaptor protein MecA -
  IE339_RS03885 (IE339_03890) cls 785948..787465 (+) 1518 WP_242173708.1 cardiolipin synthase -
  IE339_RS03890 (IE339_03895) - 787548..788759 (+) 1212 WP_242173710.1 competence protein CoiA family protein -
  IE339_RS03895 (IE339_03900) pepF 788910..790730 (+) 1821 WP_242173712.1 oligoendopeptidase F Regulator
  IE339_RS03900 (IE339_03905) - 790765..790944 (-) 180 WP_242173714.1 hypothetical protein -
  IE339_RS03905 (IE339_03910) - 791245..792090 (-) 846 WP_242176106.1 ClpXP adapter SpxH family protein -
  IE339_RS03910 (IE339_03915) - 792126..792536 (-) 411 WP_242173716.1 globin -
  IE339_RS03915 (IE339_03920) - 792884..793531 (-) 648 WP_242173718.1 lytic transglycosylase domain-containing protein -
  IE339_RS03920 (IE339_03925) - 793534..794124 (-) 591 WP_242173720.1 CYTH domain-containing protein -
  IE339_RS03925 (IE339_03930) - 794487..794873 (+) 387 WP_242173723.1 hypothetical protein -
  IE339_RS03930 (IE339_03935) - 794901..795533 (+) 633 WP_053399464.1 GTP pyrophosphokinase family protein -

Sequence

Protein


Download         Length: 606 a.a.        Molecular weight: 69804.24 Da        Isoelectric Point: 4.7122

>NTDB_id=485366 IE339_RS03895 WP_242173712.1 788910..790730(+) (pepF) [Priestia koreensis strain FS-1]
MAEQTKTKKLPVRSDIQVEDTWKLEDIYSSDQEWEKEFEAVKALLPNVTTYQGKLGESADTLYAAMQAQDELTMRASQLY
AYAHMRYDQDTGNSFYQGLNDRMKSLYTQIGGALAFFTPELLSVEEDKLKGFLEEKEELKLYAHALDEINRQRPHVLTAA
EEALLAQASEVLSSSSNTFGMLNNADLEFPSIKDENGEEVEITHGRYIRFLESSDRRVREEAFKAVYGTYGQFQNTFAST
LSGTVKKDNFNARVRKYDSARQAALSNNNIPEEVYDNLVETVNKNLHLLHRYVKLRKKVLGLDELHVYDLYTPLVKDVKM
EVTYDEAKDYILKGLAPLGEEYLDILKEGFDNRWVDVHENKGKRSGAYSSGTYGTNPYILMNWQDNVNNLFTLAHEFGHS
VHSYYTRKTQPYPYGDYSIFVAEVASTCNEALLNDYLLENIDDEKKRLYLLNHYLEGFRGTVFRQTMFAEFEHDIHVRAQ
NGEPLTPELLTKLYYELNKKYFGEDLVVDEEIGLEWSRIPHFYYNYYVYQYSTGFSAAAALSKQILEEGEPAVKRYVDFL
KAGSSDYPINVLKKAGVDMTTAKPVEEALAVFEEKLSEMERLLEQL

Nucleotide


Download         Length: 1821 bp        

>NTDB_id=485366 IE339_RS03895 WP_242173712.1 788910..790730(+) (pepF) [Priestia koreensis strain FS-1]
ATGGCTGAACAAACAAAAACGAAAAAGCTGCCGGTACGTAGTGATATCCAAGTAGAAGATACGTGGAAATTAGAAGATAT
TTATTCATCCGATCAAGAATGGGAGAAAGAGTTTGAAGCGGTTAAAGCACTTCTTCCGAATGTGACAACTTATCAAGGGA
AATTAGGCGAATCAGCCGATACGTTATATGCGGCGATGCAGGCTCAAGATGAACTTACAATGAGAGCGAGTCAGCTGTAC
GCATATGCTCATATGCGCTACGATCAAGATACAGGAAATTCATTCTATCAAGGGTTAAATGATCGAATGAAGTCACTGTA
TACACAAATCGGGGGTGCACTTGCTTTCTTTACGCCTGAGCTATTATCAGTAGAGGAAGACAAGCTAAAAGGATTTTTAG
AAGAGAAAGAAGAGTTAAAGCTTTATGCACATGCGCTCGATGAAATTAACCGTCAGCGTCCGCACGTATTAACAGCTGCT
GAAGAAGCGTTATTGGCACAAGCATCAGAGGTGCTATCATCTTCTAGCAATACGTTTGGAATGCTAAATAACGCTGATTT
AGAATTTCCATCGATCAAAGACGAAAACGGAGAAGAAGTTGAAATTACGCATGGCCGTTACATTCGCTTCTTAGAAAGCA
GCGATCGTCGTGTTCGCGAAGAGGCGTTCAAAGCTGTATATGGTACATATGGACAATTTCAAAATACGTTTGCGAGCACA
TTAAGTGGAACGGTGAAAAAAGATAATTTTAATGCTCGTGTGCGCAAATATGATTCCGCTCGTCAAGCAGCGCTCAGCAA
CAATAACATTCCAGAAGAAGTGTACGATAACCTTGTGGAGACGGTAAATAAAAACCTTCATCTGCTTCATCGTTATGTGA
AGCTACGTAAAAAAGTATTGGGATTAGACGAGCTGCACGTATATGACCTTTATACACCGCTTGTAAAAGATGTAAAAATG
GAAGTAACGTACGATGAAGCAAAAGACTATATTTTAAAAGGTCTTGCACCGCTTGGTGAAGAGTATTTAGACATTTTAAA
AGAGGGCTTCGACAACCGCTGGGTTGACGTTCATGAGAACAAAGGGAAACGAAGCGGAGCTTACTCGTCTGGAACATATG
GTACAAACCCATATATCTTAATGAACTGGCAGGATAATGTGAATAATCTCTTCACGTTGGCACATGAATTTGGTCACTCT
GTTCACAGTTACTATACGCGCAAAACACAGCCATATCCATACGGTGATTATTCGATCTTTGTAGCTGAAGTTGCGTCGAC
ATGTAACGAAGCGTTATTAAATGATTACTTATTGGAAAACATTGATGACGAGAAGAAACGCTTGTATCTACTGAATCATT
ATTTAGAAGGATTCCGTGGTACCGTGTTCCGTCAAACGATGTTTGCTGAGTTTGAGCATGATATTCACGTTCGCGCTCAA
AACGGTGAACCGTTGACACCAGAGCTACTGACGAAACTTTATTACGAACTAAATAAAAAGTATTTCGGTGAGGATCTTGT
TGTAGACGAAGAAATTGGTTTAGAGTGGTCACGTATTCCACATTTCTATTACAATTACTACGTGTATCAATATTCCACTG
GATTTAGCGCAGCGGCAGCGTTAAGTAAGCAAATCCTTGAAGAAGGAGAGCCAGCTGTCAAACGCTATGTGGACTTCTTA
AAAGCGGGAAGCTCGGATTATCCAATCAACGTCTTGAAAAAGGCAGGAGTGGATATGACAACAGCGAAGCCAGTAGAAGA
AGCACTCGCGGTATTTGAAGAGAAGCTTTCTGAAATGGAACGTTTGTTAGAGCAATTATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(120-189)

Peptidase family M3 (Peptidase_M3)

(211-590)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

49.41

97.855

0.484