Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   IE339_RS00555 Genome accession   NZ_CP061868
Coordinates   106134..107513 (+) Length   459 a.a.
NCBI ID   WP_242172712.1    Uniprot ID   -
Organism   Priestia koreensis strain FS-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 101134..112513
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IE339_RS00535 (IE339_00535) - 101448..101909 (+) 462 WP_053403249.1 CtsR family transcriptional regulator -
  IE339_RS00540 (IE339_00540) - 101943..102497 (+) 555 WP_242172702.1 UvrB/UvrC motif-containing protein -
  IE339_RS00545 (IE339_00545) - 102499..103572 (+) 1074 WP_242172705.1 protein arginine kinase -
  IE339_RS00550 (IE339_00550) clpC 103594..106038 (+) 2445 WP_242172708.1 ATP-dependent protease ATP-binding subunit ClpC -
  IE339_RS00555 (IE339_00555) radA 106134..107513 (+) 1380 WP_242172712.1 DNA repair protein RadA Machinery gene
  IE339_RS00560 (IE339_00560) disA 107516..108589 (+) 1074 WP_242172714.1 DNA integrity scanning diadenylate cyclase DisA -
  IE339_RS00565 (IE339_00565) - 108744..109838 (+) 1095 WP_242172717.1 PIN/TRAM domain-containing protein -
  IE339_RS00570 (IE339_00570) ispD 109859..110539 (+) 681 WP_242172718.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  IE339_RS00575 (IE339_00575) ispF 110552..111031 (+) 480 WP_242172721.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 49933.22 Da        Isoelectric Point: 6.7690

>NTDB_id=485356 IE339_RS00555 WP_242172712.1 106134..107513(+) (radA) [Priestia koreensis strain FS-1]
MAKKKTKFTCQHCGYESAKWMGKCPGCGSWNSMVEEMEQVVKAGRRGAFSGATSTAVQKPQSITTIESTQEPRIYTKSPE
FDRVLGGGIVRGSLVLIGGDPGIGKSTILLQTSAQLADNDHKVLYISGEESIKQTKLRADRLNIKSNNLFVHAETNLELI
SEIINEMDPEFVVVDSIQTIYHSDITSAPGSVSQVRECTAELMRIAKTKGIAVFIVGHVTKEGSIAGPRLLEHMVDTVLY
FEGERHHTYRILRAVKNRFGSTNEIGIFEMKEAGLEEVANPSEIFLEERSQGAAGSIVVASMEGTRPVLVEIQALISPTS
FGNPRRMATGIDHNRVPLLMAVLEKRVGMLLQNQDAYLKVAGGVRLDEPAIDLAIAVSIASSFRDVSSNPTDVVIGEVGL
TGEVRRVSRIDQRVQEAAKLGFKRVILPERNLGGWKIPDGIEVVGVSTVSEALQYTLGG

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=485356 IE339_RS00555 WP_242172712.1 106134..107513(+) (radA) [Priestia koreensis strain FS-1]
ATGGCAAAGAAGAAAACAAAATTTACATGCCAGCATTGCGGCTATGAATCTGCCAAGTGGATGGGAAAATGCCCTGGATG
TGGATCTTGGAATTCGATGGTAGAGGAAATGGAGCAAGTAGTGAAAGCAGGAAGAAGAGGAGCCTTTTCTGGTGCCACAT
CAACAGCTGTTCAAAAGCCTCAATCAATTACAACGATAGAATCTACGCAAGAGCCCCGTATCTATACTAAATCTCCAGAA
TTTGATCGTGTTTTAGGTGGGGGAATTGTGCGTGGATCACTTGTTTTAATCGGGGGAGACCCGGGGATTGGGAAGTCCAC
CATTCTTCTACAAACATCCGCACAGTTGGCCGATAATGACCATAAGGTTCTCTATATTTCAGGGGAAGAATCCATTAAAC
AAACAAAGCTGCGCGCAGATCGATTAAACATTAAATCAAACAATCTATTTGTCCATGCCGAGACCAATTTAGAATTAATT
TCTGAAATCATTAATGAAATGGACCCCGAGTTTGTTGTAGTCGATTCCATTCAAACCATTTACCACAGCGATATTACATC
CGCTCCCGGAAGTGTTTCACAAGTAAGAGAATGTACAGCAGAACTTATGCGTATTGCTAAAACGAAGGGAATTGCTGTTT
TTATAGTAGGACATGTTACGAAGGAAGGTTCTATTGCAGGTCCACGTCTATTAGAACATATGGTGGATACAGTTCTCTAT
TTTGAGGGAGAGCGCCATCACACGTATCGTATTTTACGAGCAGTAAAAAATCGTTTCGGTTCAACCAATGAGATTGGTAT
CTTTGAAATGAAAGAAGCAGGGTTAGAAGAGGTAGCAAATCCTTCTGAAATCTTTTTAGAAGAGCGCTCTCAAGGTGCAG
CAGGATCAATTGTAGTAGCTTCTATGGAAGGAACAAGACCTGTTTTAGTAGAAATACAAGCCTTAATAAGCCCAACAAGC
TTTGGGAATCCAAGAAGAATGGCTACTGGCATTGACCATAATCGCGTACCGCTGTTAATGGCTGTTTTAGAAAAGCGCGT
TGGAATGTTGCTTCAAAACCAAGACGCTTACTTAAAAGTAGCCGGAGGAGTGAGGCTTGATGAGCCAGCGATCGATTTAG
CCATTGCGGTAAGCATCGCCTCTAGCTTTAGAGATGTTTCGTCTAATCCAACCGATGTGGTTATTGGTGAGGTCGGATTA
ACCGGAGAAGTGCGCAGAGTCTCTCGAATTGATCAAAGGGTTCAAGAAGCAGCTAAGCTAGGCTTTAAGCGAGTGATTTT
ACCCGAGCGTAATTTAGGAGGATGGAAGATACCTGATGGCATTGAAGTCGTCGGCGTGTCCACGGTCTCTGAAGCACTGC
AGTATACGTTAGGAGGATAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(73-223)

Subunit ChlI of Mg-chelatase (ChlI)

(367-431)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

77.56

100

0.776
  radA Streptococcus pneumoniae Rx1

60.352

98.911

0.597
  radA Streptococcus pneumoniae D39

60.352

98.911

0.597
  radA Streptococcus pneumoniae R6

60.352

98.911

0.597
  radA Streptococcus pneumoniae TIGR4

60.352

98.911

0.597
  radA Streptococcus mitis NCTC 12261

60.352

98.911

0.597
  radA Streptococcus mitis SK321

60.352

98.911

0.597